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Using phylogenetically-informed annotation (PIA) to search for light-interacting genes in transcriptomes from non-model organisms.
BMC Bioinformatics. 2014 Nov 19;15(1):350. doi: 10.1186/s12859-014-0350-x.
BMC Bioinformatics. 2014.
PMID: 25407802
Free PMC article.
The evolution of complexity in the visual systems of stomatopods: insights from transcriptomics.
Porter ML, Speiser DI, Zaharoff AK, Caldwell RL, Cronin TW, Oakley TH.
Porter ML, et al. Among authors: zaharoff ak.
Integr Comp Biol. 2013 Jul;53(1):39-49. doi: 10.1093/icb/ict060. Epub 2013 May 31.
Integr Comp Biol. 2013.
PMID: 23727979
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Phylotranscriptomics to bring the understudied into the fold: monophyletic ostracoda, fossil placement, and pancrustacean phylogeny.
Oakley TH, Wolfe JM, Lindgren AR, Zaharoff AK.
Oakley TH, et al. Among authors: zaharoff ak.
Mol Biol Evol. 2013 Jan;30(1):215-33. doi: 10.1093/molbev/mss216. Epub 2012 Sep 12.
Mol Biol Evol. 2013.
PMID: 22977117
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Ocular and extraocular expression of opsins in the rhopalium of Tripedalia cystophora (Cnidaria: Cubozoa).
Bielecki J, Zaharoff AK, Leung NY, Garm A, Oakley TH.
Bielecki J, et al. Among authors: zaharoff ak.
PLoS One. 2014 Jun 5;9(6):e98870. doi: 10.1371/journal.pone.0098870. eCollection 2014.
PLoS One. 2014.
PMID: 24901369
Free PMC article.
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