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ChEBI: a database and ontology for chemical entities of biological interest.
Degtyarenko K, de Matos P, Ennis M, Hastings J, Zbinden M, McNaught A, Alcántara R, Darsow M, Guedj M, Ashburner M. Degtyarenko K, et al. Among authors: de matos p. Nucleic Acids Res. 2008 Jan;36(Database issue):D344-50. doi: 10.1093/nar/gkm791. Epub 2007 Oct 11. Nucleic Acids Res. 2008. PMID: 17932057 Free PMC article.
ChEBI: an open bioinformatics and cheminformatics resource.
Degtyarenko K, Hastings J, de Matos P, Ennis M. Degtyarenko K, et al. Among authors: de matos p. Curr Protoc Bioinformatics. 2009 Jun;Chapter 14:14.9.1-14.9.20. doi: 10.1002/0471250953.bi1409s26. Curr Protoc Bioinformatics. 2009. PMID: 19496059
Chemical Entities of Biological Interest: an update.
de Matos P, Alcántara R, Dekker A, Ennis M, Hastings J, Haug K, Spiteri I, Turner S, Steinbeck C. de Matos P, et al. Nucleic Acids Res. 2010 Jan;38(Database issue):D249-54. doi: 10.1093/nar/gkp886. Epub 2009 Oct 23. Nucleic Acids Res. 2010. PMID: 19854951 Free PMC article.
A database for chemical proteomics: ChEBI.
de Matos P, Adams N, Hastings J, Moreno P, Steinbeck C. de Matos P, et al. Methods Mol Biol. 2012;803:273-96. doi: 10.1007/978-1-61779-364-6_19. Methods Mol Biol. 2012. PMID: 22065232
Rhea--a manually curated resource of biochemical reactions.
Alcántara R, Axelsen KB, Morgat A, Belda E, Coudert E, Bridge A, Cao H, de Matos P, Ennis M, Turner S, Owen G, Bougueleret L, Xenarios I, Steinbeck C. Alcántara R, et al. Among authors: de matos p. Nucleic Acids Res. 2012 Jan;40(Database issue):D754-60. doi: 10.1093/nar/gkr1126. Epub 2011 Dec 1. Nucleic Acids Res. 2012. PMID: 22135291 Free PMC article.
MetaboLights--an open-access general-purpose repository for metabolomics studies and associated meta-data.
Haug K, Salek RM, Conesa P, Hastings J, de Matos P, Rijnbeek M, Mahendraker T, Williams M, Neumann S, Rocca-Serra P, Maguire E, González-Beltrán A, Sansone SA, Griffin JL, Steinbeck C. Haug K, et al. Among authors: de matos p. Nucleic Acids Res. 2013 Jan;41(Database issue):D781-6. doi: 10.1093/nar/gks1004. Epub 2012 Oct 29. Nucleic Acids Res. 2013. PMID: 23109552 Free PMC article.
Dovetailing biology and chemistry: integrating the Gene Ontology with the ChEBI chemical ontology.
Hill DP, Adams N, Bada M, Batchelor C, Berardini TZ, Dietze H, Drabkin HJ, Ennis M, Foulger RE, Harris MA, Hastings J, Kale NS, de Matos P, Mungall CJ, Owen G, Roncaglia P, Steinbeck C, Turner S, Lomax J. Hill DP, et al. Among authors: de matos p. BMC Genomics. 2013 Jul 29;14:513. doi: 10.1186/1471-2164-14-513. BMC Genomics. 2013. PMID: 23895341 Free PMC article.
Bioinformatics meets user-centred design: a perspective.
Pavelin K, Cham JA, de Matos P, Brooksbank C, Cameron G, Steinbeck C. Pavelin K, et al. Among authors: de matos p. PLoS Comput Biol. 2012;8(7):e1002554. doi: 10.1371/journal.pcbi.1002554. Epub 2012 Jul 12. PLoS Comput Biol. 2012. PMID: 22807660 Free PMC article.
45 results