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MGnify: the microbiome analysis resource in 2020.
Mitchell AL, Almeida A, Beracochea M, Boland M, Burgin J, Cochrane G, Crusoe MR, Kale V, Potter SC, Richardson LJ, Sakharova E, Scheremetjew M, Korobeynikov A, Shlemov A, Kunyavskaya O, Lapidus A, Finn RD. Mitchell AL, et al. Among authors: almeida a. Nucleic Acids Res. 2020 Jan 8;48(D1):D570-D578. doi: 10.1093/nar/gkz1035. Nucleic Acids Res. 2020. PMID: 31696235 Free PMC article.
Genome watch: Keeping tally in the microbiome.
Almeida A, Shao Y. Almeida A, et al. Nat Rev Microbiol. 2018 Mar;16(3):124. doi: 10.1038/nrmicro.2018.13. Epub 2018 Jan 30. Nat Rev Microbiol. 2018. PMID: 29379216
A human gut bacterial genome and culture collection for improved metagenomic analyses.
Forster SC, Kumar N, Anonye BO, Almeida A, Viciani E, Stares MD, Dunn M, Mkandawire TT, Zhu A, Shao Y, Pike LJ, Louie T, Browne HP, Mitchell AL, Neville BA, Finn RD, Lawley TD. Forster SC, et al. Among authors: almeida a. Nat Biotechnol. 2019 Feb;37(2):186-192. doi: 10.1038/s41587-018-0009-7. Epub 2019 Feb 4. Nat Biotechnol. 2019. PMID: 30718869 Free PMC article.
A new genomic blueprint of the human gut microbiota.
Almeida A, Mitchell AL, Boland M, Forster SC, Gloor GB, Tarkowska A, Lawley TD, Finn RD. Almeida A, et al. Nature. 2019 Apr;568(7753):499-504. doi: 10.1038/s41586-019-0965-1. Epub 2019 Feb 11. Nature. 2019. PMID: 30745586 Free PMC article.
Microbial abundance, activity and population genomic profiling with mOTUs2.
Milanese A, Mende DR, Paoli L, Salazar G, Ruscheweyh HJ, Cuenca M, Hingamp P, Alves R, Costea PI, Coelho LP, Schmidt TSB, Almeida A, Mitchell AL, Finn RD, Huerta-Cepas J, Bork P, Zeller G, Sunagawa S. Milanese A, et al. Among authors: almeida a. Nat Commun. 2019 Mar 4;10(1):1014. doi: 10.1038/s41467-019-08844-4. Nat Commun. 2019. PMID: 30833550 Free PMC article.
A unified catalog of 204,938 reference genomes from the human gut microbiome.
Almeida A, Nayfach S, Boland M, Strozzi F, Beracochea M, Shi ZJ, Pollard KS, Sakharova E, Parks DH, Hugenholtz P, Segata N, Kyrpides NC, Finn RD. Almeida A, et al. Nat Biotechnol. 2021 Jan;39(1):105-114. doi: 10.1038/s41587-020-0603-3. Epub 2020 Jul 20. Nat Biotechnol. 2021. PMID: 32690973 Free PMC article.
Massive expansion of human gut bacteriophage diversity.
Camarillo-Guerrero LF, Almeida A, Rangel-Pineros G, Finn RD, Lawley TD. Camarillo-Guerrero LF, et al. Among authors: almeida a. Cell. 2021 Feb 18;184(4):1098-1109.e9. doi: 10.1016/j.cell.2021.01.029. Cell. 2021. PMID: 33606979 Free PMC article.
4,686 results