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Viral genomes reveal patterns of the SARS-CoV-2 outbreak in Washington State.
Müller NF, Wagner C, Frazar CD, Roychoudhury P, Lee J, Moncla LH, Pelle B, Richardson M, Ryke E, Xie H, Shrestha L, Addetia A, Rachleff VM, Lieberman NAP, Huang ML, Gautom R, Melly G, Hiatt B, Dykema P, Adler A, Brandstetter E, Han PD, Fay K, Llcisin M, Lacombe K, Sibley TR, Truong M, Wolf CR, Boeckh M, Englund JA, Famulare M, Lutz BR, Rieder MJ, Thompson M, Duchin JS, Starita LM, Chu HY, Shendure J, Jerome KR, Lindquist S, Greninger AL, Nickerson DA, Bedford T. Müller NF, et al. Among authors: greninger al. medRxiv [Preprint]. 2020 Sep 30:2020.09.30.20204230. doi: 10.1101/2020.09.30.20204230. medRxiv. 2020. PMID: 33024981 Free PMC article. Updated. Preprint.
Outcomes associated with SARS-CoV-2 viral clades in COVID-19.
Nakamichi K, Shen JZ, Lee CS, Lee AY, Roberts EA, Simonson PD, Roychoudhury P, Andriesen JG, Randhawa AK, Mathias PC, Greninger A, Jerome KR, Van Gelder RN. Nakamichi K, et al. medRxiv [Preprint]. 2020 Sep 25:2020.09.24.20201228. doi: 10.1101/2020.09.24.20201228. medRxiv. 2020. PMID: 32995827 Free PMC article. Updated. Preprint.
T-cell receptor sequencing identifies prior SARS-CoV-2 infection and correlates with neutralizing antibody titers and disease severity.
Elyanow R, Snyder TM, Dalai SC, Gittelman RM, Boonyaratanakornkit J, Wald A, Selke S, Wener MH, Morishima C, Greninger AL, Holbrook MR, Kaplan IM, Zahid HJ, Carlson JM, Baldo L, Manley T, Robins HS, Koelle DM. Elyanow R, et al. Among authors: greninger al. medRxiv [Preprint]. 2021 Mar 22:2021.03.19.21251426. doi: 10.1101/2021.03.19.21251426. medRxiv. 2021. PMID: 33791723 Free PMC article. Updated. Preprint.
Associations between SARS-CoV-2 variants and risk of COVID-19 hospitalization among confirmed cases in Washington State: a retrospective cohort study.
Paredes MI, Lunn SM, Famulare M, Frisbie LA, Painter I, Burstein R, Roychoudhury P, Xie H, Mohamed Bakhash SA, Perez R, Lukes M, Ellis S, Sathees S, Mathias PC, Greninger A, Starita LM, Frazar CD, Ryke E, Zhong W, Gamboa L, Threlkeld M, Lee J, McDermot E, Truong M, Nickerson DA, Bates DL, Hartman ME, Haugen E, Nguyen TN, Richards JD, Rodriguez JL, Stamatoyannopoulos JA, Thorland E, Melly G, Dykema PE, MacKellar DC, Gray HK, Singh A, Peterson JM, Russell D, Torres LM, Lindquist S, Bedford T, Allen KJ, Oltean HN. Paredes MI, et al. medRxiv [Preprint]. 2022 Feb 16:2021.09.29.21264272. doi: 10.1101/2021.09.29.21264272. medRxiv. 2022. PMID: 34729567 Free PMC article. Updated. Preprint.
Monoclonal antibody treatment drives rapid culture conversion in SARS-CoV-2 infection.
Boucau J, Chew KW, Choudhary M, Deo R, Regan J, Flynn JP, Crain CR, Hughes MD, Ritz J, Moser C, Dragavon JA, Javan AC, Nirula A, Klekotka P, Greninger AL, Coombs RW, Fischer WA 2nd, Daar ES, Wohl DA, Eron JJ, Currier JS, Smith DM, Li JZ, Barczak AK; ACTIV-2/A5401 Study Team. Boucau J, et al. Among authors: greninger al. medRxiv [Preprint]. 2021 Dec 30:2021.12.25.21268211. doi: 10.1101/2021.12.25.21268211. medRxiv. 2021. PMID: 35018382 Free PMC article. Updated. Preprint.
Dynamics of SARS-CoV-2 VOC neutralization and novel mAb reveal protection against Omicron.
Hao L, Hsiang TY, Dalmat RR, Ireton R, Morton J, Stokes C, Netland J, Hale M, Thouvenel C, Wald A, Franko NM, Huden K, Chu H, Greninger A, Tilles S, Barrett LK, Van Voorhis WC, Munt J, Scobey T, Baric RS, Rawlings D, Pepper M, Drain PK, Gale M. Hao L, et al. medRxiv [Preprint]. 2022 Aug 16:2022.08.12.22278720. doi: 10.1101/2022.08.12.22278720. medRxiv. 2022. PMID: 36032965 Free PMC article. Updated. Preprint.
Sentinel Surveillance System Implementation and Evaluation for SARS-CoV-2 Genomic Data, Washington, USA, 2020-2021.
Oltean HN, Allen KJ, Frisbie L, Lunn SM, Torres LM, Manahan L, Painter I, Russell D, Singh A, Peterson JM, Grant K, Peter C, Cao R, Garcia K, Mackellar D, Jones L, Halstead H, Gray H, Melly G, Nickerson D, Starita L, Frazar C, Greninger AL, Roychoudhury P, Mathias PC, Kalnoski MH, Ting CN, Lykken M, Rice T, Gonzalez-Robles D, Bina D, Johnson K, Wiley CL, Magnuson SC, Parsons CM, Chapman ED, Valencia CA, Fortna RR, Wolgamot G, Hughes JP, Baseman JG, Bedford T, Lindquist S. Oltean HN, et al. Among authors: greninger al. Emerg Infect Dis. 2023 Feb;29(2):242-251. doi: 10.3201/eid2902.221482. Epub 2023 Jan 3. Emerg Infect Dis. 2023. PMID: 36596565 Free PMC article. Review.
Genomic Analysis of Early Monkeypox Virus Outbreak Strains, Washington, USA.
Roychoudhury P, Sereewit J, Xie H, Nunley E, Bakhash SM, Lieberman NAP, Greninger AL. Roychoudhury P, et al. Among authors: greninger al. Emerg Infect Dis. 2023 Mar;29(3):644-646. doi: 10.3201/eid2903.221446. Epub 2023 Feb 2. Emerg Infect Dis. 2023. PMID: 36732066 Free PMC article.
347 results