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Histone H4K16ac Binding Function of the Triple PHD Finger Cassette of MLL4.
Kumar Sinha V, Zhang Y, Xu L, Chen YW, Picaud S, Zandian M, Biswas S, Filippakopoulos P, Wang SP, Shi X, Kutateladze TG. Kumar Sinha V, et al. Among authors: shi x. J Mol Biol. 2024 Apr 1;436(7):168212. doi: 10.1016/j.jmb.2023.168212. Epub 2023 Jul 20. J Mol Biol. 2024. PMID: 37481158
ING2 PHD domain links histone H3 lysine 4 methylation to active gene repression.
Shi X, Hong T, Walter KL, Ewalt M, Michishita E, Hung T, Carney D, Peña P, Lan F, Kaadige MR, Lacoste N, Cayrou C, Davrazou F, Saha A, Cairns BR, Ayer DE, Kutateladze TG, Shi Y, Côté J, Chua KF, Gozani O. Shi X, et al. Among authors: shi y. Nature. 2006 Jul 6;442(7098):96-9. doi: 10.1038/nature04835. Epub 2006 May 21. Nature. 2006. PMID: 16728974 Free PMC article.
Proteome-wide analysis in Saccharomyces cerevisiae identifies several PHD fingers as novel direct and selective binding modules of histone H3 methylated at either lysine 4 or lysine 36.
Shi X, Kachirskaia I, Walter KL, Kuo JH, Lake A, Davrazou F, Chan SM, Martin DG, Fingerman IM, Briggs SD, Howe L, Utz PJ, Kutateladze TG, Lugovskoy AA, Bedford MT, Gozani O. Shi X, et al. J Biol Chem. 2007 Jan 26;282(4):2450-5. doi: 10.1074/jbc.C600286200. Epub 2006 Dec 1. J Biol Chem. 2007. PMID: 17142463 Free PMC article.
The histone-H3K4-specific demethylase KDM5B binds to its substrate and product through distinct PHD fingers.
Klein BJ, Piao L, Xi Y, Rincon-Arano H, Rothbart SB, Peng D, Wen H, Larson C, Zhang X, Zheng X, Cortazar MA, Peña PV, Mangan A, Bentley DL, Strahl BD, Groudine M, Li W, Shi X, Kutateladze TG. Klein BJ, et al. Among authors: shi x. Cell Rep. 2014 Jan 30;6(2):325-35. doi: 10.1016/j.celrep.2013.12.021. Epub 2014 Jan 9. Cell Rep. 2014. PMID: 24412361 Free PMC article.
The Taf14 YEATS domain is a reader of histone crotonylation.
Andrews FH, Shinsky SA, Shanle EK, Bridgers JB, Gest A, Tsun IK, Krajewski K, Shi X, Strahl BD, Kutateladze TG. Andrews FH, et al. Among authors: shi x. Nat Chem Biol. 2016 Jun;12(6):396-8. doi: 10.1038/nchembio.2065. Epub 2016 Apr 18. Nat Chem Biol. 2016. PMID: 27089029 Free PMC article.
Recognition of Histone H3K14 Acylation by MORF.
Klein BJ, Simithy J, Wang X, Ahn J, Andrews FH, Zhang Y, Côté J, Shi X, Garcia BA, Kutateladze TG. Klein BJ, et al. Among authors: shi x. Structure. 2017 Apr 4;25(4):650-654.e2. doi: 10.1016/j.str.2017.02.003. Epub 2017 Mar 9. Structure. 2017. PMID: 28286003 Free PMC article.
YEATS2 links histone acetylation to tumorigenesis of non-small cell lung cancer.
Mi W, Guan H, Lyu J, Zhao D, Xi Y, Jiang S, Andrews FH, Wang X, Gagea M, Wen H, Tora L, Dent SYR, Kutateladze TG, Li W, Li H, Shi X. Mi W, et al. Among authors: shi x. Nat Commun. 2017 Oct 20;8(1):1088. doi: 10.1038/s41467-017-01173-4. Nat Commun. 2017. PMID: 29057918 Free PMC article.
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