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Computational correction of copy number effect improves specificity of CRISPR-Cas9 essentiality screens in cancer cells.
Meyers RM, Bryan JG, McFarland JM, Weir BA, Sizemore AE, Xu H, Dharia NV, Montgomery PG, Cowley GS, Pantel S, Goodale A, Lee Y, Ali LD, Jiang G, Lubonja R, Harrington WF, Strickland M, Wu T, Hawes DC, Zhivich VA, Wyatt MR, Kalani Z, Chang JJ, Okamoto M, Stegmaier K, Golub TR, Boehm JS, Vazquez F, Root DE, Hahn WC, Tsherniak A. Meyers RM, et al. Among authors: sizemore ae. Nat Genet. 2017 Dec;49(12):1779-1784. doi: 10.1038/ng.3984. Epub 2017 Oct 30. Nat Genet. 2017. PMID: 29083409 Free PMC article.
Small-molecule targeting of brachyury transcription factor addiction in chordoma.
Sharifnia T, Wawer MJ, Chen T, Huang QY, Weir BA, Sizemore A, Lawlor MA, Goodale A, Cowley GS, Vazquez F, Ott CJ, Francis JM, Sassi S, Cogswell P, Sheppard HE, Zhang T, Gray NS, Clarke PA, Blagg J, Workman P, Sommer J, Hornicek F, Root DE, Hahn WC, Bradner JE, Wong KK, Clemons PA, Lin CY, Kotz JD, Schreiber SL. Sharifnia T, et al. Nat Med. 2019 Feb;25(2):292-300. doi: 10.1038/s41591-018-0312-3. Epub 2019 Jan 21. Nat Med. 2019. PMID: 30664779 Free PMC article.
Dynamic graph metrics: Tutorial, toolbox, and tale.
Sizemore AE, Bassett DS. Sizemore AE, et al. Neuroimage. 2018 Oct 15;180(Pt B):417-427. doi: 10.1016/j.neuroimage.2017.06.081. Epub 2017 Jul 8. Neuroimage. 2018. PMID: 28698107 Free PMC article.
Modeling and interpreting mesoscale network dynamics.
Khambhati AN, Sizemore AE, Betzel RF, Bassett DS. Khambhati AN, et al. Among authors: sizemore ae. Neuroimage. 2018 Oct 15;180(Pt B):337-349. doi: 10.1016/j.neuroimage.2017.06.029. Epub 2017 Jun 20. Neuroimage. 2018. PMID: 28645844 Free PMC article. Review.
Cliques and cavities in the human connectome.
Sizemore AE, Giusti C, Kahn A, Vettel JM, Betzel RF, Bassett DS. Sizemore AE, et al. J Comput Neurosci. 2018 Feb;44(1):115-145. doi: 10.1007/s10827-017-0672-6. Epub 2017 Nov 16. J Comput Neurosci. 2018. PMID: 29143250 Free PMC article.