ProDom and ProDom-CG: tools for protein domain analysis and whole genome comparisons

F Corpet; F Servant; J Gouzy; D Kahn

doi:10.1093/nar/28.1.267

ProDom and ProDom-CG: tools for protein domain analysis and whole genome comparisons

Nucleic Acids Res. 2000 Jan 1;28(1):267-9. doi: 10.1093/nar/28.1.267.

Authors

F Corpet¹, F Servant, J Gouzy, D Kahn

Affiliation

¹ Laboratoire de Génétique Cellulaire, INRA/CNRS, BP 27, F-31326 Castanet-Tolosan, Cedex, France.

Abstract

ProDom contains all protein domain families automatically generated from the SWISS-PROT and TrEMBL sequence databases (http://www. toulouse.inra.fr/prodom.html ). ProDom-CG results from a similar domain analysis as applied to completed genomes (http://www.toulouse. inra.fr/prodomCG.html ). Recent improvements to the ProDom database and its server include: scaling up to include sequences from TrEMBL, addition of Pfam-A entries to the set of expert validated families, assignment of stable accession numbers, consistency indicators for domain families, domain arrangements of sub-families and links to Pfam-A.

Publication types

Comparative Study
Research Support, Non-U.S. Gov't

MeSH terms

Computer Graphics
Databases, Factual*
Genome*
Proteins / chemistry
Proteins / genetics*

Substances

Proteins