Molecular symmetry as an aid to geometry determination in ligand protein complexes

J Magn Reson. 2000 Jan;142(1):153-8. doi: 10.1006/jmre.1999.1937.

Abstract

Dipole-dipole couplings between pairs of spin 12 nuclei, which can be measured from NMR spectra in field-ordered media, offer useful constraints on the orientation of various fragments in molecular systems. However, the orientation of fragments relative to a molecule fixed reference frame is often key to complete structure determination. Here, we demonstrate that the symmetry properties of molecular complexes can aid in the definition of a reference frame. It is shown that a threefold rotational symmetry axis dictates the direction and symmetry of the experimentally determined order tensor for alpha-methyl-mannose in fast exchange among the three symmetry-related binding sites of mannose binding protein. This approach facilitates studies of the geometry of the ligand in the protein-ligand complex and also may provide a novel route to structure determination of a homomultimeric protein.

Publication types

  • Research Support, U.S. Gov't, P.H.S.

MeSH terms

  • Carrier Proteins / chemistry*
  • Collectins
  • Lectins / chemistry
  • Magnetic Resonance Spectroscopy / methods
  • Methylmannosides / chemistry*
  • Protein Binding

Substances

  • Carrier Proteins
  • Collectins
  • Lectins
  • Methylmannosides
  • methylmannoside