Competition-based cellular peptide binding assays for 13 prevalent HLA class I alleles using fluorescein-labeled synthetic peptides

Hum Immunol. 2003 Feb;64(2):245-55. doi: 10.1016/s0198-8859(02)00787-5.

Abstract

We report the development, validation, and application of competition-based peptide binding assays for 13 prevalent human leukocyte antigen (HLA) class I alleles. The assays are based on peptide binding to HLA molecules on living cells carrying the particular allele. Competition for binding between the test peptide of interest and a fluorescein-labeled HLA class I binding peptide is used as read out. The use of cell membrane-bound HLA class I molecules circumvents the need for laborious biochemical purification of these molecules in soluble form. Previously, we have applied this principle for HLA-A2 and HLA-A3. We now describe the assays for HLA-A1, HLA-A11, HLA-A24, HLA-A68, HLA-B7, HLA-B8, HLA-B14, HLA-B35, HLA-B60, HLA-B61, and HLA-B62. Together with HLA-A2 and HLA-A3, these alleles cover more than 95% of the Caucasian population. Several allele-specific parameters were determined for each assay. Using these assays, we identified novel HLA class I high-affinity binding peptides from HIVpol, p53, PRAME, and minor histocompatibility antigen HA-1. Thus these convenient and accurate peptide-binding assays will be useful for the identification of putative cytotoxic T lymphocyte epitopes presented on a diverse array of HLA class I molecules.

Publication types

  • Comparative Study

MeSH terms

  • Alleles
  • Amino Acid Motifs
  • Amino Acid Sequence
  • Antigens, Neoplasm / immunology
  • Antigens, Neoplasm / metabolism
  • Binding, Competitive
  • Cell Line, Transformed
  • Epitopes, T-Lymphocyte / immunology
  • Epitopes, T-Lymphocyte / metabolism
  • Gene Products, pol / immunology
  • Gene Products, pol / metabolism
  • Genes, MHC Class I*
  • HIV Antigens / immunology
  • HIV Antigens / metabolism
  • HLA-A Antigens / immunology
  • HLA-A Antigens / metabolism
  • HLA-B Antigens / immunology
  • HLA-B Antigens / metabolism
  • Histocompatibility Antigens Class I / immunology*
  • Histocompatibility Antigens Class I / metabolism
  • Humans
  • Hydrogen-Ion Concentration
  • Inhibitory Concentration 50
  • Minor Histocompatibility Antigens / immunology
  • Minor Histocompatibility Antigens / metabolism
  • Molecular Sequence Data
  • Oligopeptides / immunology
  • Oligopeptides / metabolism
  • Peptide Fragments / chemical synthesis
  • Peptide Fragments / immunology*
  • Peptide Fragments / metabolism
  • Protein Binding
  • T-Lymphocytes, Cytotoxic / immunology
  • Tumor Suppressor Protein p53 / immunology
  • Tumor Suppressor Protein p53 / metabolism

Substances

  • Antigens, Neoplasm
  • Epitopes, T-Lymphocyte
  • Gene Products, pol
  • HA-1 antigen
  • HIV Antigens
  • HLA-A Antigens
  • HLA-B Antigens
  • Histocompatibility Antigens Class I
  • Minor Histocompatibility Antigens
  • Oligopeptides
  • PRAME protein, human
  • Peptide Fragments
  • Tumor Suppressor Protein p53