Variation in the pH-dependent pre-steady-state and steady-state kinetic characteristics of cysteine-proteinase mechanism: evidence for electrostatic modulation of catalytic-site function by the neighbouring carboxylate anion

Biochem J. 2003 Jun 15;372(Pt 3):735-46. doi: 10.1042/BJ20030177.

Abstract

The acylation and deacylation stages of the hydrolysis of N -acetyl-Phe-Gly methyl thionoester catalysed by papain and actinidin were investigated by stopped-flow spectral analysis. Differences in the forms of pH-dependence of the steady-state and pre-steady-state kinetic parameters support the hypothesis that, whereas for papain, in accord with the traditional view, the rate-determining step is the base-catalysed reaction of the acyl-enzyme intermediate with water, for actinidin it is a post-acylation conformational change required to permit release of the alcohol product and its replacement in the catalytic site by the key water molecule. Possible assignments of the kinetically influential p K (a) values, guided by the results of modelling, including electrostatic-potential calculations, and of the mechanistic roles of the ionizing groups, are discussed. It is concluded that Asp(161) is the source of a key electrostatic modulator (p K (a) 5.0+/-0.1) in actinidin, analogous to Asp(158) in papain, whose influence is not detected kinetically; it is always in the 'on' state because of its low p K (a) value (2.8+/-0.06).

Publication types

  • Comparative Study
  • Research Support, Non-U.S. Gov't

MeSH terms

  • Acylation
  • Aspartic Acid / chemistry
  • Catalysis
  • Catalytic Domain
  • Cysteine Endopeptidases / chemistry*
  • Cysteine Endopeptidases / metabolism*
  • Esters / chemistry
  • Esters / metabolism
  • Hydrogen-Ion Concentration
  • Hydrolysis
  • Kinetics
  • Models, Molecular
  • Papain / chemistry*
  • Papain / metabolism*
  • Protein Conformation
  • Regression Analysis
  • Spectrometry, Fluorescence / methods
  • Static Electricity
  • Sulfhydryl Compounds / chemistry
  • Sulfhydryl Compounds / metabolism

Substances

  • Esters
  • Sulfhydryl Compounds
  • Aspartic Acid
  • Cysteine Endopeptidases
  • actinidain
  • Papain