Crystallization and preliminary X-ray characterization of the relaxase domain of F factor TraI

Acta Crystallogr D Biol Crystallogr. 2003 Aug;59(Pt 8):1514-6. doi: 10.1107/s0907444903012964. Epub 2003 Jul 23.

Abstract

Conjugative plasmids are capable of transferring a copy of themselves in single-stranded form from donor to recipient bacteria. Prior to transfer, one plasmid strand must be cleaved in a sequence-specific manner by a relaxase or mobilization protein. TraI is the relaxase for the conjugative plasmid F factor. A 36 kDa N-terminal fragment of TraI possesses the single-stranded DNA-binding and cleavage activity of the protein. Crystals of the 36 kDa TraI fragment in native and selenomethionine-labeled forms were grown by sitting-drop vapor-diffusion methods using PEG 1000 as the precipitant. Crystallization in the presence of chloride salts of magnesium and strontium was required to obtain crystals yielding high-resolution diffraction. To maintain high-resolution diffraction upon freezing, crystals had to be soaked in crystallization buffer with stepwise increases of ethylene glycol. The resulting crystals were trigonal and diffracted to a resolution of 3.1 A or better using synchrotron radiation.

Publication types

  • Research Support, U.S. Gov't, Non-P.H.S.
  • Research Support, U.S. Gov't, P.H.S.

MeSH terms

  • Binding Sites
  • Crystallization
  • DNA Helicases / chemistry*
  • DNA Nucleotidyltransferases / metabolism
  • Diffusion
  • Escherichia coli Proteins
  • Ethylene Glycol / chemistry
  • F Factor / chemistry*
  • Freezing
  • Magnesium / chemistry
  • Magnesium Chloride / chemistry
  • Plasmids / metabolism
  • Polyethylene Glycols / chemistry
  • Protein Conformation
  • Protein Structure, Tertiary
  • Selenomethionine / chemistry
  • X-Ray Diffraction
  • X-Rays

Substances

  • Escherichia coli Proteins
  • Magnesium Chloride
  • Polyethylene Glycols
  • Selenomethionine
  • DNA Nucleotidyltransferases
  • DNA relaxase
  • TraI protein, E coli
  • DNA Helicases
  • Ethylene Glycol
  • Magnesium