Characterization of a novel human gene containing ANK repeats and ARM domains

Biochem Biophys Res Commun. 2004 May 21;318(1):38-45. doi: 10.1016/j.bbrc.2004.03.186.

Abstract

We report here on characterization of a novel human gene on chromosome 2q32, containing several ankyrin repeats and ARM domains. The gene FLJ25415, including at least 31 exons and spanning about 90kb of a gene-rich genomic region, is present in the human genome as a single copy. It seems highly conserved along the mammalian phylogeny. By analysing FLJ25415 gene expression in different human tissues, we demonstrated a ubiquitously expression pattern with extensive alternative splicing. In silico prediction of promoter regions revealed the presence of a TATA box and some hypothetical transcription factor binding sites, such as TMF, C/EBPalpha, LE-1, and NF-ATp.

Publication types

  • Research Support, Non-U.S. Gov't
  • Research Support, U.S. Gov't, P.H.S.

MeSH terms

  • Alternative Splicing
  • Animals
  • Ankyrin Repeat / genetics*
  • Base Sequence
  • Binding Sites
  • DNA, Complementary / genetics
  • Exons / genetics
  • Expressed Sequence Tags
  • Gene Expression
  • Genes / genetics
  • Humans
  • Introns / genetics
  • Mice
  • Molecular Sequence Data
  • Nerve Tissue Proteins / chemistry*
  • Nerve Tissue Proteins / genetics*
  • Polyadenylation
  • Promoter Regions, Genetic / genetics
  • Protein Structure, Tertiary
  • RNA, Messenger / genetics
  • Sequence Alignment
  • TATA Box / genetics
  • Transcription Initiation Site

Substances

  • DNA, Complementary
  • Nerve Tissue Proteins
  • RNA, Messenger

Associated data

  • GENBANK/AJ549812
  • GENBANK/AK030065
  • GENBANK/AK045669
  • RefSeq/NM_028091
  • RefSeq/NM_176980
  • RefSeq/NP_795954
  • RefSeq/XM_234772