Combined haplotype analysis of the interleukin-19 and -20 genes: relationship to plaque-type psoriasis

Genes Immun. 2004 Dec;5(8):662-7. doi: 10.1038/sj.gene.6364141.

Abstract

There is increasing evidence to suggest that the newly discovered cytokines interleukin (IL)-19 and -20 have a role in the function of epidermis and in psoriasis. The genes encoding these cytokines locate into the genomic IL-10 region on human chromosome 1. The aim of the present study was to analyze whether single-nucleotide polymorphisms (SNPs) in these genes have an impact on the susceptibility for psoriasis. From pairwise linkage disequilibrium (LD) matrix of the IL-19 and -20 gene polymorphisms, what reflects the nonrandom association of alleles at these markers, it was apparent that IL-19 and -20 genes form one block of LD. We found that the HT3 CACCGGAA haplotype of the IL-19 and -20 genes was associated with an increased risk of psoriasis, reflecting its role in determining susceptibility to plaque-type psoriasis. Although association analysis of the IL-19 gene indicated that minor alleles of the IL-19 gene SNPs (rs2243188, rs2243169 and rs2243158) revealed protective effect to psoriasis and haplotype analysis of the IL-19 gene proved significant protective effect of the TGATA haplotype in case of late-onset disease, combined haplotype analysis of the IL-19 and -20 genes demonstrated that protective effect of the IL-19 gene is secondary to the susceptibility effect of the IL-20 gene.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Alleles
  • DNA Primers
  • Estonia
  • Gene Components
  • Genetic Predisposition to Disease*
  • Genotype
  • Haplotypes / genetics*
  • Humans
  • Interleukin-10 / genetics*
  • Interleukins / genetics*
  • Linkage Disequilibrium
  • Polymerase Chain Reaction
  • Polymorphism, Single Nucleotide / genetics
  • Psoriasis / genetics*
  • Risk Factors

Substances

  • DNA Primers
  • IL19 protein, human
  • Interleukins
  • Interleukin-10
  • interleukin 20