Variation in the coat protein sequence of British isolates of Turnip yellow mosaic virus and comparison with previously published isolates. Brief report

Arch Virol. 2005 Nov;150(11):2347-55. doi: 10.1007/s00705-005-0593-y. Epub 2005 Aug 1.

Abstract

Isolates of Turnip yellow mosaic virus (TYMV) were collected from wild cabbage (Brassica oleracea) on a 400 m stretch of Dorset coastline. The coat protein genes of four isolates showed high homology in nucleotide sequence (0.970-1.000, mean 0.987). Lower levels of homology where found to previously published sequences of Australian isolates [10] (0.725-0.775, mean 0.741). The amino acid composition of the Dorset isolates showed high levels of homology (0.964-1.000, mean 0.986). Numerous amino acid substitutions occurred between the Dorset and Australian isolates (0.705-0.819, mean 0.742). Comparison with other isolates showed large genetic distances between the Dorset isolates and both European and Australian isolates.

MeSH terms

  • Amino Acid Sequence
  • Base Sequence
  • Brassica napus / virology*
  • Capsid Proteins / chemistry*
  • Capsid Proteins / genetics
  • Capsid Proteins / isolation & purification
  • Conserved Sequence
  • Molecular Sequence Data
  • Mosaic Viruses
  • Sequence Alignment
  • Sequence Homology, Amino Acid
  • Sequence Homology, Nucleic Acid
  • Tymovirus / chemistry
  • Tymovirus / classification
  • Tymovirus / genetics
  • Tymovirus / isolation & purification*
  • United Kingdom

Substances

  • Capsid Proteins