The guanine cation radical: investigation of deprotonation states by ESR and DFT

J Phys Chem B. 2006 Nov 30;110(47):24171-80. doi: 10.1021/jp064361y.

Abstract

This work reports ESR studies that identify the favored site of deprotonation of the guanine cation radical (G*+) in an aqueous medium at 77 K. Using ESR and UV-visible spectroscopy, one-electron oxidized guanine is investigated in frozen aqueous D2O solutions of 2'-deoxyguanosine (dGuo) at low temperatures at various pHs at which the guanine cation radical, G*+ (pH 3-5), singly deprotonated species, G(-H)* (pH 7-9), and doubly deprotonated species, G(-2H)*- (pH > 11), are found. C-8-deuteration of dGuo to give 8-D-dGuo removes the major proton hyperfine coupling at C-8. This isolates the anisotropic nitrogen couplings for each of the three species and aids our analyses. These anisotropic nitrogen couplings were assigned to specific nitrogen sites by use of 15N-substituted derivatives at N1, N2, and N3 atoms in dGuo. Both ESR and UV-visible spectra are reported for each of the species: G*+, G(-H)*, and G(-2H)*-. The experimental anisotropic ESR hyperfine couplings are compared to those obtained from DFT calculations for the various tautomers of G(-H)*. Using the B3LYP/6-31G(d) method, the geometries and energies of G*+ and its singly deprotonated state in its two tautomeric forms, G(N1-H)* and G(N2-H)*, were investigated. In a nonhydrated state, G(N2-H)* is found to be more stable than G(N1-H)*, but on hydration with seven water molecules G(N1-H)* is found to be more stable than G(N2-H)*. The theoretically calculated hyperfine coupling constants (HFCCs) of G*+, G(N1-H)*, and G(-2H)*- match the experimentally observed HFCCs best on hydration with seven or more waters. For G(-2H)*-, the hyperfine coupling constant (HFCC) at the exocyclic nitrogen atom (N2) is especially sensitive to the number of hydrating water molecules; good agreement with experiment is not obtained until nine or 10 waters of hydration are included.

Publication types

  • Research Support, N.I.H., Extramural

MeSH terms

  • Algorithms*
  • Anisotropy
  • Cations
  • Deoxyguanosine / analogs & derivatives
  • Deuterium Oxide / chemistry
  • Electron Spin Resonance Spectroscopy
  • Electrons
  • Free Radicals / chemistry*
  • Guanine / chemistry*
  • Hydrogen-Ion Concentration
  • Isomerism
  • Molecular Conformation
  • Nitrogen / chemistry
  • Oxidation-Reduction
  • Protons*
  • Spectrophotometry, Ultraviolet
  • Temperature
  • Water / chemistry

Substances

  • Cations
  • Free Radicals
  • Protons
  • Water
  • Guanine
  • Deoxyguanosine
  • Deuterium Oxide
  • Nitrogen