HIV type 1 subtype A envelope genetic evolution in a slow progressing individual with consistent broadly neutralizing antibodies

AIDS Res Hum Retroviruses. 2009 Nov;25(11):1165-9. doi: 10.1089/aid.2008.0161.

Abstract

Studies of viruses taken from individuals with broad cross-neutralizing antibodies against primary isolates may reveal novel antibody specificities and their associated epitopes that could be useful for immunogen design. We report on the Env antigenic variability of a slow progressing HIV-1 subtype A-infected donor with consistent broad cross-neutralizing antibodies during the second decade of disease progression after vertical transmission. The Env evolution is characterized by a genetic shift to variants with altered V1-V5 loop sequences, marked by consecutive changes in V1, V4-V5, and C3 and largely conserved V2 and V3 loop sequences. Major V1 Env sequence expansion, variation by a duplication event, and cumulative addition of cysteine residues and potential N-glycosylation sites over time may contribute to escape from antibody pressure directed to Env receptor domains by changing the exposure of neutralization-sensitive epitopes. Conservation of functional epitopes may correlate with the continued presence of broad cross-neutralizing antibodies.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Adolescent
  • Amino Acid Sequence
  • Antibodies, Neutralizing / blood*
  • Evolution, Molecular*
  • Female
  • HIV Infections / immunology*
  • HIV Infections / virology
  • HIV Long-Term Survivors*
  • HIV-1* / classification
  • HIV-1* / genetics
  • HIV-1* / immunology
  • Humans
  • Molecular Sequence Data
  • Neutralization Tests
  • Phylogeny
  • Sequence Alignment
  • Sequence Analysis, DNA
  • env Gene Products, Human Immunodeficiency Virus / genetics*
  • env Gene Products, Human Immunodeficiency Virus / immunology

Substances

  • Antibodies, Neutralizing
  • env Gene Products, Human Immunodeficiency Virus

Associated data

  • GENBANK/FM165626
  • GENBANK/FM165627
  • GENBANK/FM165628
  • GENBANK/FM165629
  • GENBANK/FM165630
  • GENBANK/FM165631
  • GENBANK/FM165632
  • GENBANK/FM165633
  • GENBANK/FM165634
  • GENBANK/FM165635
  • GENBANK/FM165636
  • GENBANK/FM165637
  • GENBANK/FM165638
  • GENBANK/FM165639
  • GENBANK/FM165640
  • GENBANK/FM165641
  • GENBANK/FM165642
  • GENBANK/FM165643
  • GENBANK/FM165644
  • GENBANK/FM165645
  • GENBANK/FM165646
  • GENBANK/FM165647