Detection of SNP-SNP interactions in trios of parents with schizophrenic children

Genet Epidemiol. 2010 Jul;34(5):396-406. doi: 10.1002/gepi.20488.

Abstract

Schizophrenia (SZ) is a heritable and complex psychiatric disorder with an estimated worldwide prevalence of about 1%. Research on the risk factors for SZ has thus far yielded few clues to causes, but has pointed to a heterogeneous etiology that likely involves multiple genes and gene-environment interactions. In this manuscript, we apply a novel method (trio logic regression, Li et al., 2009) to case-parent trio data from a SZ candidate gene study conducted on families of Ashkenazi Jewish descent, and demonstrate the method's ability to detect multi-gene models for SZ risk in the family-based design. In particular, we demonstrate how this method revealed a genotype-phenotype association that includes an allele without marginal effect.

Publication types

  • Research Support, N.I.H., Extramural
  • Research Support, U.S. Gov't, Non-P.H.S.

MeSH terms

  • Alleles
  • Female
  • Genetic Predisposition to Disease*
  • Genetic Testing
  • Genotype
  • Haplotypes
  • Humans
  • Jews*
  • Logistic Models
  • Male
  • Models, Genetic
  • Parents*
  • Phenotype
  • Polymorphism, Single Nucleotide*
  • Schizophrenia / ethnology
  • Schizophrenia / genetics*