Identification and characterization of a novel paramyxovirus, porcine parainfluenza virus 1, from deceased pigs

J Gen Virol. 2013 Oct;94(Pt 10):2184-2190. doi: 10.1099/vir.0.052985-0. Epub 2013 Aug 5.

Abstract

We describe the discovery and characterization of a novel paramyxovirus, porcine parainfluenza virus 1 (PPIV-1), from swine. The virus was detected in 12 (3.1 %) of 386 nasopharyngeal and two (0.7 %) of 303 rectal swab samples from 386 deceased pigs by reverse transcription-PCR, with viral loads of up to 10(6) copies ml(-1). Complete genome sequencing and phylogenetic analysis showed that PPIV-1 represented a novel paramyxovirus within the genus Respirovirus, being most closely related to human parainfluenza virus 1 (HPIV-1) and Sendai virus (SeV). In contrast to HPIV-1, PPIV-1 possessed a mRNA editing function in the phosphoprotein gene. Moreover, PPIV-1 was unique among respiroviruses in having two G residues instead of three to five G residues following the A6 run at the editing site. Nevertheless, PPIV-1, HPIV-1 and SeV share common genomic features and may belong to a separate group within the genus Respirovirus. The presence of PPIV-1 in mainly respiratory samples suggests a possible association with respiratory disease, similar to HPIV-1 and SeV.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Animals
  • Base Sequence
  • Genome, Viral
  • Molecular Sequence Data
  • Paramyxoviridae / genetics*
  • Paramyxoviridae / isolation & purification*
  • Paramyxoviridae Infections / mortality
  • Paramyxoviridae Infections / veterinary*
  • Paramyxoviridae Infections / virology
  • Phylogeny
  • Swine
  • Swine Diseases / mortality
  • Swine Diseases / virology*
  • Viral Load

Associated data

  • GENBANK/JX857409
  • GENBANK/JX857410
  • GENBANK/JX857411