Genotype phenotype associations across the voltage-gated sodium channel family

J Med Genet. 2014 Oct;51(10):650-8. doi: 10.1136/jmedgenet-2014-102608. Epub 2014 Aug 27.

Abstract

Mutations in genes encoding voltage-gated sodium channels have emerged as the most clinically relevant genes associated with epilepsy, cardiac conduction defects, skeletal muscle channelopathies and peripheral pain disorders. Geneticists in partnership with neurologists and cardiologists are often asked to comment on the clinical significance of specific mutations. We have reviewed the evidence relating to genotype phenotype associations among the best known voltage-gated sodium channel related disorders. Comparing over 1300 sodium channel mutations in central and peripheral nervous system, heart and muscle, we have identified many similarities in the genetic and clinical characteristics across the voltage-gated sodium channel family. There is evidence, that the level of impairment a specific mutation causes can be anticipated by the underlying physico-chemical property change of that mutation. Across missense mutations those with higher Grantham scores are associated with more severe phenotypes and truncating mutations underlie the most severe phenotypes. Missense mutations are clustered in specific areas and are associated with distinct phenotypes according to their position in the protein. Inherited mutations tend to be less severe than de novo mutations which are usually associated with greater physico-chemical difference. These findings should lead to a better understanding of the clinical significance of specific voltage-gated sodium channel mutations, aiding geneticists and physicians in the interpretation of genetic variants and counselling individuals and their families.

Keywords: SCN1A; SCN2A; SCN4A; SCN5A; SCN9A.

Publication types

  • Review

MeSH terms

  • Epilepsies, Myoclonic / genetics
  • Genetic Association Studies*
  • Humans
  • Mutation / genetics
  • Seizures, Febrile / genetics
  • Voltage-Gated Sodium Channels / genetics*

Substances

  • Voltage-Gated Sodium Channels