Development and persistence of DAA resistance associated mutations in patients failing HCV treatment

J Clin Virol. 2015 Nov:72:114-8. doi: 10.1016/j.jcv.2015.08.015. Epub 2015 Sep 12.

Abstract

Background: Direct-acting antiviral agents (DAAs) combined with pegylated-interferon (PegIFN) and ribavirin (RBV) are still a standard treatment in patients with genotype 1HCV infection. However, virologic response could be impaired by baseline or early selection of resistant HCV strains.

Objectives: The aim of this study was to determine the onset and persistence of resistance-associated mutations (RAMs) in the NS3 and NS5B genes of DAA-naïve patients failing treatment.

Study design: Direct sequencing of HCV NS3 was performed in 49 DAA-naïve patients with HCV genotype 1 infection.

Results: Eight out of 23 patients (34.7%) failed PegIFN/RBV/telaprevir during the 12-weeks of therapy. Treatment failure was associated with the development of RAMs at amino-acids 36,54,80 and 155 of the HCV protease in 6/8 patients (75%). Among patients treated with PegIFN/RBV/boceprevir treatment, 4/18 (22.2%) failed therapy. Of these, 2 (50%) carried virus strains which developed a RAM at amino-acids 54 and 155. Among HCV strains with RAMs, 7 belonged to genotype 1a and 1 to 1b. Finally, in 6/10 (60%) patients, drug-resistant variants could still be detected for up to 3-7 months after stopping therapy.

Conclusions: A higher rate (p=0.49) of treatment failure was observed in patients receiving telaprevir- compared to the boceprevir-based combination. In addition, compared with genotype 1b, genotype 1a was associated with higher rates (p=0.01) of treatment failure due to virus resistant strains. Resistance testing at baseline and during DAA treatment should be taken into consideration when treating patients with new HCV combination therapies.

Keywords: Drug resistance; HCV genotype 1; Hepatitis C virus; Protease inhibitors; Sequencing.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Antiviral Agents / administration & dosage*
  • Antiviral Agents / pharmacology*
  • Drug Resistance, Viral*
  • Genotype
  • Hepacivirus / classification
  • Hepacivirus / drug effects
  • Hepacivirus / genetics*
  • Hepacivirus / isolation & purification
  • Hepatitis C, Chronic / drug therapy*
  • Hepatitis C, Chronic / virology*
  • Humans
  • Mutation, Missense*
  • Oligopeptides / administration & dosage
  • Oligopeptides / pharmacology
  • Proline / administration & dosage
  • Proline / analogs & derivatives
  • Proline / pharmacology
  • Sequence Analysis, DNA
  • Treatment Failure
  • Viral Nonstructural Proteins / genetics

Substances

  • Antiviral Agents
  • NS3 protein, hepatitis C virus
  • Oligopeptides
  • Viral Nonstructural Proteins
  • telaprevir
  • N-(3-amino-1-(cyclobutylmethyl)-2,3-dioxopropyl)-3-(2-((((1,1-dimethylethyl)amino)carbonyl)amino)-3,3-dimethyl-1-oxobutyl)-6,6-dimethyl-3-azabicyclo(3.1.0)hexan-2-carboxamide
  • Proline
  • NS-5 protein, hepatitis C virus