Coding region variant 186H/R in Exon 4 of APOBEC3G among individuals of Western India

APMIS. 2016 May;124(5):401-5. doi: 10.1111/apm.12517. Epub 2016 Feb 8.

Abstract

The allelic variations in the AIDS restriction genes have been associated with the acquisition of HIV-1 and its progression. The distribution of antiviral gene variants significantly differs between populations. Therefore, we aimed to evaluate the distribution of variant allele of 186H/R in exon4 of APOBEC3G between HIV infected individuals and healthy controls among western Indian.In the present cross-sectional study, we enrolled a total of 153 HIV-infected patients confirmed and 156 unrelated healthy individuals. Polymorphism for 186H/R in exon4 of APOBEC3G gene was genotyped by PCR-RFLP. With the frequency of 186HR heterozygous genotype of APOBEC3G was found to be 13% in healthy controls and none in HIV infected cases. The frequency of 186HH common genotype of APOBEC3G was observed higher in HIV infected individuals compared with healthy controls (100% vs 91.7%). The variant genotype 186RR in APOBEC3G was not found in both the groups. The frequency of 186R allele of APOBEC3G was found 4.16% in healthy controls and nil in HIV-infected cases. The frequency of 186H allele of APOBEC3G was found to be higher in HIV-infected cases compared with healthy controls (100% vs 95.83%). The frequency of 186R allele in exon4 of APOBEC3G was found to be 4.16% in healthy controls. This observation differs from the previous report published from North India stating the absence of 186R allele of APOBEC3G in the North Indian individuals. The variant 186H/R in exon4 of APOBEC3G was neither associated with risk of acquisition of HIV-1 nor its progression.

Keywords: AIDS restriction factor; APOBEC3G; acquisition of HIV-1; coding region polymorphism; genetic susceptibility.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • APOBEC-3G Deaminase
  • Adolescent
  • Adult
  • Amino Acid Substitution
  • Cross-Sectional Studies
  • Cytidine Deaminase / genetics*
  • Exons*
  • Female
  • Gene Frequency
  • Genetic Predisposition to Disease*
  • Genotyping Techniques
  • HIV Infections / genetics*
  • HIV Infections / immunology*
  • HIV-1 / immunology*
  • Humans
  • India
  • Middle Aged
  • Polymerase Chain Reaction
  • Polymorphism, Genetic*
  • Polymorphism, Restriction Fragment Length
  • Young Adult

Substances

  • APOBEC-3G Deaminase
  • APOBEC3G protein, human
  • Cytidine Deaminase