Modelling the drivers of the spread of Plasmodium falciparum hrp2 gene deletions in sub-Saharan Africa

Elife. 2017 Aug 24:6:e25008. doi: 10.7554/eLife.25008.

Abstract

Rapid diagnostic tests (RDTs) have transformed malaria diagnosis. The most prevalent P. falciparum RDTs detect histidine-rich protein 2 (PfHRP2). However, pfhrp2 gene deletions yielding false-negative RDTs, first reported in South America in 2010, have been confirmed in Africa and Asia. We developed a mathematical model to explore the potential for RDT-led diagnosis to drive selection of pfhrp2-deleted parasites. Low malaria prevalence and high frequencies of people seeking treatment resulted in the greatest selection pressure. Calibrating our model against confirmed pfhrp2-deletions in the Democratic Republic of Congo, we estimate a starting frequency of 6% pfhrp2-deletion prior to RDT introduction. Furthermore, the patterns observed necessitate a degree of selection driven by the introduction of PfHRP2-based RDT-guided treatment. Combining this with parasite prevalence and treatment coverage estimates, we map the model-predicted spread of pfhrp2-deletion, and identify the geographic regions in which surveillance for pfhrp2-deletion should be prioritised.

Keywords: P. falciparum; epidemiology; global health; mapping; mathematical modelling; pfhrp2-deletion; rapid diagnostic tests.

Publication types

  • Research Support, N.I.H., Extramural
  • Research Support, Non-U.S. Gov't

MeSH terms

  • Antigens, Protozoan / genetics*
  • Antimalarials / therapeutic use
  • Democratic Republic of the Congo
  • Diagnostic Tests, Routine / methods*
  • False Positive Reactions*
  • Gene Deletion*
  • Genetic Variation*
  • Humans
  • Malaria, Falciparum / diagnosis*
  • Malaria, Falciparum / drug therapy
  • Malaria, Falciparum / transmission
  • Models, Theoretical
  • Phylogeography
  • Plasmodium falciparum / classification
  • Plasmodium falciparum / drug effects
  • Plasmodium falciparum / genetics*
  • Protozoan Proteins / genetics*
  • Selection, Genetic

Substances

  • Antigens, Protozoan
  • Antimalarials
  • HRP-2 antigen, Plasmodium falciparum
  • Protozoan Proteins