Cryo-EM of dynein microtubule-binding domains shows how an axonemal dynein distorts the microtubule

Elife. 2019 Jul 2:8:e47145. doi: 10.7554/eLife.47145.

Abstract

Dyneins are motor proteins responsible for transport in the cytoplasm and the beating of axonemes in cilia and flagella. They bind and release microtubules via a compact microtubule-binding domain (MTBD) at the end of a coiled-coil stalk. We address how cytoplasmic and axonemal dynein MTBDs bind microtubules at near atomic resolution. We decorated microtubules with MTBDs of cytoplasmic dynein-1 and axonemal dynein DNAH7 and determined their cryo-EM structures using helical Relion. The majority of the MTBD is rigid upon binding, with the transition to the high-affinity state controlled by the movement of a single helix at the MTBD interface. DNAH7 contains an 18-residue insertion, found in many axonemal dyneins, that contacts the adjacent protofilament. Unexpectedly, we observe that DNAH7, but not dynein-1, induces large distortions in the microtubule cross-sectional curvature. This raises the possibility that dynein coordination in axonemes is mediated via conformational changes in the microtubule.

Keywords: E. coli; Relion; axoneme; cilia; cryoEM; dynein; human; microtuble; molecular biophysics; mouse; structural biology.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Amino Acid Sequence
  • Animals
  • Axonemal Dyneins / chemistry*
  • Axonemal Dyneins / metabolism*
  • Axonemal Dyneins / ultrastructure
  • Cryoelectron Microscopy*
  • Humans
  • Mice
  • Microtubules / chemistry*
  • Microtubules / metabolism
  • Microtubules / ultrastructure*
  • Models, Molecular
  • Protein Binding
  • Protein Domains
  • Protein Subunits / chemistry
  • Protein Subunits / metabolism
  • Tubulin / metabolism

Substances

  • Protein Subunits
  • Tubulin
  • Axonemal Dyneins

Associated data

  • PDB/6RZA
  • PDB/6RZB