Single-cell RNA sequencing profiling of the effects of aging on alveolar stem cells

Sci China Life Sci. 2019 Aug;62(8):1028-1037. doi: 10.1007/s11427-019-9583-9. Epub 2019 Jul 17.

Abstract

The aging of alveolar stem cells has been linked to many chronic lung diseases, including pulmonary fibrosis. However, the effects of aging on alveolar stem cells during homeostasis and post-injury alveolar repair have not been well characterized. Here we conducted a single-cell RNA sequencing (scRNA-seq) analysis of alveolar stem cells of 3-month-old and 12-month-old mice to characterize the aging effect on alveolar stem cells. Our results have shown that the transcriptomes of alveolar stem cells of 3-month-old and 12-month-old mice are not significantly different under the steady condition. However, after a bleomycin-induced lung injury, the alveolar stem cells of 12-month-old mice show enhanced inflammatory responses and decreased lipid metabolism. Our study suggests a close relationship among aging, lipid metabolism, inflammatory responses and chronic lung diseases.

Keywords: aging; inflammation response; lipid metabolism; pulmonary alveolar stem cells; single-cell RNA sequencing (scRNA-seq).

MeSH terms

  • Age Factors
  • Animals
  • Lipid Metabolism
  • Male
  • Mice, Transgenic
  • Models, Animal
  • Pneumonia / metabolism
  • Pulmonary Alveoli / cytology
  • Pulmonary Fibrosis / metabolism*
  • RNA, Small Cytoplasmic / metabolism
  • Sequence Analysis, RNA
  • Single-Cell Analysis
  • Stem Cells / metabolism*
  • Transcriptome

Substances

  • RNA, Small Cytoplasmic