Practical approach to method verification in plasma and validation in cerebrospinal fluid under accreditation using a flexible scope in molecular virology: setting up the HIV, HBV and HCV Aptima™ Quant Dx assays

Clin Chem Lab Med. 2020 Jan 28;58(2):251-260. doi: 10.1515/cclm-2019-0502.

Abstract

Background Our laboratory obtained the ISO 15189 accreditation for the plasmatic HIV-1, HBV and HCV viral load (VL) using the m2000 RealTime™ system, which was recently changed for the platform Panther®. Here, we discuss a strategy for performing method validation/verification very quickly. Methods We performed the mandatory (repeatability, internal quality assessment [IQA], measurement uncertainty [MU]) and optional technical verifications for CE/IVD assays using the flexible scope range A. We also performed the mandatory assays for the validation of HIV-1 VL in the cerebrospinal fluid (CSF) using the flexible scope range B. The change was checked by following up on the turnaround time (TAT). Results The coefficient of variation (CV%) for repeatability and IQA complied with the limit of 0.25 log. The MU results ranged from 0.04 to 0.25 log copies or IU/mL. The comparisons of methods showed excellent correlations (R2 = 0.96 for the three parameters) but a delayed centrifugation on HCV VL showed variations of up to 2 log IU/mL. An excellent linearity for HIV-1 in the CSF was obtained from 1.5 to 5 log copies/mL with R2 = 0.99. The TAT increased (84%-98%) in routine usage. Conclusions The three Aptima assays are well suited for routine laboratory use and can be integrated within less than 2 weeks in accordance with flexible scope range A. Our data allows us to confidently perform HIV-1 VL in CSF following flexible scope range B. Finally, we provide an organizational guide for flexible scope management in molecular virology within a short time frame.

Keywords: HBV; HCV; HIV-1; ISO 15189; flexible scope management; method validation; method verification; viral load.

MeSH terms

  • Blood-Borne Infections / diagnosis
  • Blood-Borne Infections / virology
  • HIV-1 / genetics*
  • HIV-1 / isolation & purification
  • Hepacivirus / genetics*
  • Hepacivirus / isolation & purification
  • Hepatitis B virus / genetics*
  • Hepatitis B virus / isolation & purification
  • Humans
  • Molecular Diagnostic Techniques / methods
  • Molecular Diagnostic Techniques / standards*
  • RNA, Viral / blood
  • RNA, Viral / cerebrospinal fluid
  • RNA, Viral / standards*
  • Reagent Kits, Diagnostic
  • Real-Time Polymerase Chain Reaction
  • Reproducibility of Results
  • Viral Load
  • pol Gene Products, Human Immunodeficiency Virus / genetics

Substances

  • RNA, Viral
  • Reagent Kits, Diagnostic
  • pol Gene Products, Human Immunodeficiency Virus