Pre-Test Probability and Genes and Variants of Uncertain Significance in Familial Long QT Syndrome

Heart Lung Circ. 2020 Apr;29(4):512-519. doi: 10.1016/j.hlc.2019.12.011. Epub 2020 Jan 3.

Abstract

The genetics underlying familial long QT syndrome (LQTS) are among the best characterised of all of the inherited heart conditions. Cohort and registry studies have demonstrated important genotype-phenotype correlations that are now essential in guiding clinical practice of patients with the most common three genotypes; KCNQ1 (LQT type 1), KCNH2 (LQT type 2) and SCN5A (LQT type 3). However, the growing number of genes-now more than 16-is confusing, and there is much doubt as to whether many actually cause LQTS at all. Furthermore, changes in sequencing techniques, evolving variant classification criteria and new scientific discoveries make all genes and variants subject to a continuous process of re-classification. This review discusses the nature of variant adjudication, the important concept of pre-test probability in interpreting a genetic result and how the nomenclature of LQTS is shifting in response to this new knowledge. It further discusses the role of deep phenotyping, the inclusion of evaluation of family members in interpreting a genetic test result, or even deciding if genetic testing should occur at all, and the role of specialist multidisciplinary teams to translate this continuously evolving knowledge into the best clinical advice, in partnership with referring cardiologists.

Keywords: Cohort registry; Genetic testing; Genetics; Genotype-phenotype correlations; Long QT syndrome.

Publication types

  • Review

MeSH terms

  • ERG1 Potassium Channel / genetics*
  • Female
  • Genetic Variation*
  • Genotype*
  • Humans
  • KCNQ1 Potassium Channel / genetics*
  • Long QT Syndrome / genetics*
  • Male
  • NAV1.5 Voltage-Gated Sodium Channel / genetics*

Substances

  • ERG1 Potassium Channel
  • KCNH2 protein, human
  • KCNQ1 Potassium Channel
  • KCNQ1 protein, human
  • NAV1.5 Voltage-Gated Sodium Channel
  • SCN5A protein, human