A simple pyrocosm for studying soil microbial response to fire reveals a rapid, massive response by Pyronema species

PLoS One. 2020 Mar 4;15(3):e0222691. doi: 10.1371/journal.pone.0222691. eCollection 2020.

Abstract

We have designed a pyrocosm to enable fine-scale dissection of post-fire soil microbial communities. Using it we show that the peak soil temperature achieved at a given depth occurs hours after the fire is out, lingers near this peak for a significant time, and is accurately predicted by soil depth and the mass of charcoal burned. Flash fuels that produce no large coals were found to have a negligible soil heating effect. Coupling this system with Illumina MiSeq sequencing of the control and post-fire soil we show that we can stimulate a rapid, massive response by Pyronema, a well-known genus of pyrophilous fungus, within two weeks of a test fire. This specific stimulation occurs in a background of many other fungal taxa that do not change noticeably with the fire, although there is an overall reduction in richness and evenness. We introduce a thermo-chemical gradient model to summarize the way that heat, soil depth and altered soil chemistry interact to create a predictable, depth-structured habitat for microbes in post-fire soils. Coupling this model with the temperature relationships found in the pyrocosms, we predict that the width of a survivable "goldilocks zone", which achieves temperatures that select for postfire-adapted microbes, will stay relatively constant across a range of fuel loads. In addition we predict that a larger necromass zone, containing labile carbon and nutrients from recently heat-killed organisms, will increase in size rapidly with addition of fuel and then remain nearly constant in size over a broad range of fuel loads. The simplicity of this experimental system, coupled with the availability of a set of sequenced, assembled and annotated genomes of pyrophilous fungi, offers a powerful tool for dissecting the ecology of post-fire microbial communities.

Publication types

  • Research Support, U.S. Gov't, Non-P.H.S.

MeSH terms

  • Adaptation, Physiological / genetics
  • Ascomycota / genetics*
  • Carbon
  • Charcoal
  • Fires*
  • Forests
  • Genome, Fungal
  • Hot Temperature
  • Microbiota / physiology*
  • Soil / chemistry
  • Soil Microbiology*

Substances

  • Soil
  • Charcoal
  • Carbon

Associated data

  • Dryad/10.5061/dryad.45gd695

Grants and funding

The work was funded by the Department of Energy grants DE-SC0016365 and DE-SC0020351 to TDB. The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.