Dynamic profile of RT-PCR findings from 301 COVID-19 patients in Wuhan, China: A descriptive study

J Clin Virol. 2020 Jun:127:104346. doi: 10.1016/j.jcv.2020.104346. Epub 2020 Apr 11.

Abstract

Background: With the spread of Coronavirus Disease 2019 (COVID-19) caused by Severe Acute Respiratory Syndrome Coronavirus-2 (SARS-CoV-2) infection, its effect on society is amplified. We aimed to describe the viral detection results across different timepoints throughout the disease course.

Methods: A retrospective study of 301 confirmed COVID-19 patients hospitalized at Tongji Hospital in Wuhan, China, were included. Demographic characteristics of the patients were collected. Upper respiratory specimens (throat and/or nasal swabs) were obtained and analyzed by real-time RT-PCR for SARS-CoV-2 infection. Period of viral infection and the contagious stage were analyzed.

Results: Of 301 hospitalized COVID-19 patients, the median age was 58 years and 51.2 % were male. The median period between symptoms presence and positive SARS-CoV-2 RT-PCR results was 16 days (IQR, 10-23, N = 301). The median period between symptoms presence and an effective negative SARS-CoV-2 RT-PCR result was 20 days (IQR, 17-24; N = 216). Infected patient ≥65 years old stayed contagious longer (22 days vs 19 days, p = 0.015). Although two consecutive negative results were confirmed in 70 patients, 30 % of them had positive viral test results for the third time. Using specimens from nasal swabs to run the RT-PCR test showed a higher positive rate than using specimens from throat swabs.

Conclusions: This large-scale investigation with 1113 RT-PCR test results from 301 COVID-19 patients showed that the average contagious period of SARS-CoV-2 infected patients was 20 days. Longer observation period and more than 2 series of negative viral test are necessary for patients ≥65 years.

Keywords: COVID-19; Dynamic profile; RT-PCR; SARS-CoV-2.

MeSH terms

  • Adolescent
  • Adult
  • Age Factors
  • Aged
  • Aged, 80 and over
  • Betacoronavirus
  • COVID-19
  • COVID-19 Testing
  • COVID-19 Vaccines
  • Child
  • China / epidemiology
  • Clinical Laboratory Techniques
  • Coronavirus Infections / diagnosis*
  • False Negative Reactions
  • Female
  • Hospitalization
  • Humans
  • Male
  • Middle Aged
  • Nose / virology*
  • Pandemics
  • Pharynx / virology*
  • Pneumonia, Viral / diagnosis*
  • Qualitative Research
  • Respiratory System / virology
  • Retrospective Studies
  • Reverse Transcriptase Polymerase Chain Reaction*
  • SARS-CoV-2
  • Sex Factors
  • Young Adult