Real-time public health communication of local SARS-CoV-2 genomic epidemiology

PLoS Biol. 2020 Aug 21;18(8):e3000869. doi: 10.1371/journal.pbio.3000869. eCollection 2020 Aug.

Abstract

Genomic epidemiology can provide a unique, real-time understanding of SARS-CoV-2 transmission patterns. Yet the potential for genomic analyses to guide local policy and community-based behavioral decisions is limited because they are often oriented towards specially trained scientists and conducted on a national or global scale. Here, we propose a new paradigm: Phylogenetic analyses performed on a local level (municipal, county, or state), with results communicated in a clear, timely, and actionable manner to strengthen public health responses. We believe that presenting results rapidly, and tailored to a non-expert audience, can serve as a template for effective public health response to COVID-19 and other emerging viral diseases.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Betacoronavirus / genetics*
  • COVID-19
  • Coronavirus Infections / epidemiology*
  • Genomics
  • Humans
  • Information Dissemination*
  • Pandemics
  • Phylogeny
  • Pneumonia, Viral / epidemiology*
  • Public Health*
  • SARS-CoV-2