Pipeline for fluorescent imaging and volumetric analysis of neurons in cleared mouse spinal cords

STAR Protoc. 2022 Dec 16;3(4):101759. doi: 10.1016/j.xpro.2022.101759. Epub 2022 Oct 12.

Abstract

Precisely measuring the number and somatic volume of neurons in the central nervous system at single-cell resolution is technically challenging. Here, we combine multiple techniques to address this challenge in optically cleared mouse spinal cords. We describe in vivo neuron labeling approaches, tissue-clearing technology, light sheet fluorescence microscopy, and machine learning-guided imaging analysis. This combination provides a precise determination of the cell number and somatic volume of any neuron population in the spinal cords.

Keywords: Cell Biology; Microscopy; Molecular/Chemical Probes; Neuroscience.

Publication types

  • Research Support, N.I.H., Extramural
  • Research Support, Non-U.S. Gov't

MeSH terms

  • Animals
  • Image Processing, Computer-Assisted*
  • Mice
  • Microscopy, Fluorescence / methods
  • Neurons*
  • Spinal Cord