Life on the edge-a changing genetic landscape within an iconic American pika metapopulation over the last half century

PeerJ. 2023 Sep 28:11:e15962. doi: 10.7717/peerj.15962. eCollection 2023.

Abstract

Declines and extirpations of American pika (Ochotona princeps) populations at historically occupied sites started being documented in the literature during the early 2000s. Commensurate with global climate change, many of these losses at peripheral and lower elevation sites have been associated with changes in ambient air temperature and precipitation regimes. Here, we report on a decline in available genetic resources for an iconic American pika metapopulation, located at the southwestern edge of the species distribution in the Bodie Hills of eastern California, USA. Composed of highly fragmented habitat created by hard rock mining, the ore dumps at this site were likely colonized by pikas around the end of the 19th century from nearby natural talus outcrops. Genetic data extracted from both contemporary samples and archived natural history collections allowed us to track population and patch-level genetic diversity for Bodie pikas across three distinct sampling points during the last half- century (1948-1949, 1988-1991, 2013-2015). Reductions in within-population allelic diversity and expected heterozygosity were observed across the full time period. More extensive sampling of extant patches during the 1988-1991 and 2013-2015 periods revealed an increase in population structure and a reduction in effective population size. Furthermore, census records from the last 51 years as well as archived museum samples collected in 1947 from a nearby pika population in the Wassuk range (Nevada, USA) provide further support of the increasing isolation and genetic coalescence occurring in this region. This study highlights the importance of museum samples and long-term monitoring in contextualizing our understanding of population viability.

Keywords: American pika; Climate change; Conservation science; Evolutionary potential; Genetic monitoring.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Animals
  • Censuses
  • Climate Change
  • Ecosystem
  • Lagomorpha* / genetics
  • Nevada

Associated data

  • Dryad/10.5061/dryad.51c59zwbd

Grants and funding

Funds for travel, sample collection, laboratory analysis and genotyping was provided by a Bodie Foundation grant (Bodie Foundation is a 501 (c) (3) non-profit corporation), the University of Nevada (UNR) Ecology, Evolution and Conservation Biology graduate program summer stipend, and the UNR Diana Hadley-Lynch Scholarship awards to Kelly B. Klingler. The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.