In vitro identification of a B19 parvovirus promoter

Virology. 1987 Apr;157(2):534-8. doi: 10.1016/0042-6822(87)90296-0.

Abstract

The nucleotide sequence of the B19-Wi isolate of human parvovirus was determined and compared throughout the open reading frames and putative transcription signals with the sequence of the closely related B19-Au isolate. In vitro run off transcription assays, using B19-Wi DNA as the template, indicated that there is a strong promoter between m.u. 5 and 7. Deletion clones show that a region between nt 258 and 321 is necessary for in vitro transcriptional activity. Primer extension studies identified the start site at 31-32 nucleotides downstream of the sequence TATATATA. The strength of this left-hand promoter is unusual among parvovirus promoters characterized to date, and the possibility of an upstream enhancer element is discussed.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Base Sequence
  • DNA, Viral / genetics
  • Enhancer Elements, Genetic
  • Genes, Viral
  • Humans
  • Parvoviridae / genetics*
  • Promoter Regions, Genetic*
  • Transcription, Genetic

Substances

  • DNA, Viral

Associated data

  • GENBANK/M24682