The genomic landscape of CYP2D6 variation in the Indian population

Pharmacogenomics. 2024 Feb;25(3):147-160. doi: 10.2217/pgs-2023-0233. Epub 2024 Mar 1.

Abstract

Aim: The CYP2D6 gene is highly polymorphic, causing large interindividual variability in the metabolism of several clinically important drugs. Materials & methods: The authors investigated the diversity and distribution of CYP2D6 alleles in Indians using whole genome sequences (N = 1518). Functional consequences were assessed using pathogenicity scores and molecular dynamics simulations. Results: The analysis revealed population-specific CYP2D6 alleles (*86, *7, *111, *112, *113, *99) and remarkable differences in variant and phenotype frequencies with global populations. The authors observed that one in three Indians could benefit from a dose alteration for psychiatric drugs with accurate CYP2D6 phenotyping. Molecular dynamics simulations revealed large conformational fluctuations, confirming the predicted reduced function of *86 and *113 alleles. Conclusion: The findings emphasize the utility of comprehensive CYP2D6 profiling for aiding precision public health.

Keywords: CYP2D6; Indian population; cytochrome P450; drug metabolism; genomics; molecular dynamics simulation; personalized medicine; pharmacogenomics; pharmacology; polymorphism.

MeSH terms

  • Alleles
  • Cytochrome P-450 CYP2D6* / genetics
  • Cytochrome P-450 CYP2D6* / metabolism
  • Genomics*
  • Genotype
  • Humans
  • Phenotype

Substances

  • Cytochrome P-450 CYP2D6