16S rRNA female reproductive microbiome investigation reveals Dalfopristin, Clorgyline, and Hydrazine as potential therapeutics for the treatment of bacterial vaginosis

Diagn Microbiol Infect Dis. 2024 Jul;109(3):116349. doi: 10.1016/j.diagmicrobio.2024.116349. Epub 2024 May 11.

Abstract

Bacterial vaginosis (BV) is a prevalent vaginal illness resulting from a disruption in the vaginal microbial equilibrium. The vaginal microbiota has been shown to have a substantial impact on the development and continuation of BV. This work utilized 16S rRNA sequence analysis of vaginal microbiome samples (Control vs BV samples) utilizing Parallel-Meta 3 to investigate the variations in microbial composition. The unique genes identified were used to determine prospective therapeutic targets and their corresponding inhibitory ligands. Further, molecular docking was conducted and then MD simulations were carried out to confirm the docking outcomes. In the BV samples, we detected several anaerobic bacteria recognized for their ability to generate biofilms, namely Acetohalobium, Anaerolineaceae, Desulfobacteraceae, and others. Furthermore, we identified Dalfopristin, Clorgyline, and Hydrazine as potential therapeutic options for the management of BV. This research provides new insights into the causes of BV and shows the potential effectiveness of novel pharmacological treatments.

Keywords: 16S rRNA sequences; Bacterial vaginosis; Bioinformatics; Pharmacological targets; Reproductive medicine; Vaginal microbiome.

MeSH terms

  • Anti-Bacterial Agents / pharmacology
  • Anti-Bacterial Agents / therapeutic use
  • Bacteria / classification
  • Bacteria / drug effects
  • Bacteria / genetics
  • Female
  • Humans
  • Hydrazines* / pharmacology
  • Hydrazines* / therapeutic use
  • Microbiota* / drug effects
  • Microbiota* / genetics
  • Molecular Docking Simulation
  • RNA, Ribosomal, 16S* / genetics
  • Vagina* / microbiology
  • Vaginosis, Bacterial* / drug therapy
  • Vaginosis, Bacterial* / microbiology

Substances

  • RNA, Ribosomal, 16S
  • Hydrazines
  • hydrazine
  • Anti-Bacterial Agents