Nested RT-PCR for detection of sandfly fever virus, serotype Toscana, in clinical specimens, with confirmation by nucleotide sequence analysis

Res Virol. 1995 Sep-Oct;146(5):355-62. doi: 10.1016/0923-2516(96)80598-x.

Abstract

A single tube, reverse transcriptase/polymerase chain reaction (RT-PCR) was developed and evaluated for detecting a 400-bp product of the small RNA of sandfly fever virus, serotype Toscana (TOS). For more sensitive detection of genomic TOS RNA, a nested PCR amplifying a 243-bp cDNA within the RT-PCR product was established. Nucleotide sequence analysis of first- and second-round PCR products using the dideoxy cycle sequencing technique confirmed a previously published sequence of the TOS reference strain (ISS. Phl.3). By nested PCR, genomic TOS RNA was amplified from two consecutive sera taken 3 and 7 weeks after the onset of illness in one patient, and from CSF of a second patient obtained at the onset of meningitis. Authenticity of amplified PCR products was confirmed by nucleotide sequence analysis, revealing a sequence identical to the TOS reference strain. RT-PCR and nested PCR are useful for laboratory diagnosis and studies of the molecular epidemiology of TOS infection.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Animals
  • Base Sequence
  • Chlorocebus aethiops
  • Humans
  • Meningitis, Viral / blood
  • Meningitis, Viral / virology*
  • Molecular Sequence Data
  • Phlebotomus Fever / blood
  • Phlebotomus Fever / virology*
  • Phlebovirus / genetics
  • Phlebovirus / isolation & purification*
  • Polymerase Chain Reaction / methods*
  • RNA, Viral / analysis
  • Sensitivity and Specificity
  • Serotyping
  • Vero Cells

Substances

  • RNA, Viral