An HLA class I peptide-binding assay based on competition for binding to class I molecules on intact human B cells. Identification of conserved HIV-1 polymerase peptides binding to HLA-A*0301

Hum Immunol. 1995 Dec;44(4):189-98. doi: 10.1016/0198-8859(95)00105-0.

Abstract

A peptide-binding assay employing the HLA class I molecules on intact human B cells is described. The peptide antigens are stripped from the HLA class I molecules by mild acid treatment, after which the cells are incubated with a FL-labeled reference peptide together with different concentrations of the peptide of interest. The effectiveness by which the latter peptide competes for binding to the HLA class I molecules is assayed by measuring the amount of HLA-bound FL-labeled reference peptide with FACscan analysis. The assay is easy to perform because there is no need to purify HLA class I molecules, or to transfect cells with HLA class I molecules, and no radioactive label is used. Moreover, large panels of HLA-typed human B-cell lines are available as tools for peptide binding to a vast array of HLA molecules. The binding assay was optimized and validated with peptides of known binding capacity to either HLA-A*0201 or HLA-A*0301. The kinetics of peptide binding in this assay were shown to be comparable to that in assays employing soluble HLA class I molecules. Application of the assay in the search for potential HLA-A*0301 restricted CTL epitopes, derived from HIV-1 polymerase, resulted in the identification of five high-affinity binding peptides.

Publication types

  • Research Support, Non-U.S. Gov't
  • Research Support, U.S. Gov't, P.H.S.

MeSH terms

  • Amino Acid Sequence
  • B-Lymphocytes / immunology*
  • B-Lymphocytes / metabolism*
  • Binding Sites
  • Binding, Competitive
  • Conserved Sequence
  • Epitopes / genetics
  • Epitopes / metabolism
  • HIV Antigens / genetics
  • HIV Antigens / metabolism
  • HIV Reverse Transcriptase
  • HIV-1 / enzymology
  • HIV-1 / genetics
  • HLA-A Antigens / genetics
  • HLA-A Antigens / metabolism*
  • Humans
  • Kinetics
  • Molecular Sequence Data
  • Papillomaviridae / genetics
  • Papillomaviridae / metabolism
  • Peptide Fragments / genetics
  • Peptide Fragments / immunology
  • Peptide Fragments / metabolism
  • Protein Binding
  • RNA-Directed DNA Polymerase / genetics
  • RNA-Directed DNA Polymerase / immunology
  • RNA-Directed DNA Polymerase / metabolism*
  • T-Lymphocytes, Cytotoxic / immunology
  • Viral Proteins / genetics
  • Viral Proteins / metabolism

Substances

  • Epitopes
  • HIV Antigens
  • HLA-A Antigens
  • Peptide Fragments
  • Viral Proteins
  • HIV Reverse Transcriptase
  • RNA-Directed DNA Polymerase