Characterization of the carrot beta-tubulin gene coding a divergent isotype, beta-2

Cell Struct Funct. 1997 Apr;22(2):291-8. doi: 10.1247/csf.22.291.

Abstract

Four different beta-tubulin clones were isolated from carrot genomic and cDNA libraries. Their nucleotide sequences were determined 1 and their predicted amino acids were compared with each other. The predicted amino acid composition of the C-terminal region of three of them (beta-1, 3, 4) resembled one another, but that of one isotype (beta-2) was divergent. The beta-2 tubulin included two hydroxyl amino acids, serine and threonine, and consisted of a lower number of negatively charged amino acids than the others in the C-terminal region. The predicted hydrophobicity profile of the beta-2 tubulin around the residue 200 is less hydrophobic than beta-1, but it is still more hydrophobic than those of animal and fungal beta-tubulins. The beta-2 gene was transcribed in cultured cells and flowers, while the beta-1 gene was ubiquitously transcribed in cultured cells, roots, shoots and flowers. When the predicted amino acids of plant tubulin were compared with those of other organisms, substitutions from non-polar amino acids to those with hydroxyl group were conspicuous in the region corresponding to the third exon in the plant genes.

MeSH terms

  • Amino Acid Sequence
  • Animals
  • Bacteriophage lambda
  • Base Sequence
  • Cell Line
  • DNA, Plant
  • Daucus carota / genetics*
  • Gene Expression
  • Genes, Plant
  • Molecular Sequence Data
  • Sequence Homology, Amino Acid
  • Tubulin / genetics*

Substances

  • DNA, Plant
  • Tubulin

Associated data

  • GENBANK/U63927
  • GENBANK/U64029