Ule J - Search Results

1

Nova regulates brain-specific splicing to shape the synapse.

Ule J, Ule A, Spencer J, Williams A, Hu JS, Cline M, Wang H, Clark T, Fraser C, Ruggiu M, Zeeberg BR, Kane D, Weinstein JN, Blume J, Darnell RB. Ule J, et al. Among authors: ule a. Nat Genet. 2005 Aug;37(8):844-52. doi: 10.1038/ng1610. Epub 2005 Jul 24. Nat Genet. 2005. PMID: 16041372

2

Transcriptome-wide RNA binding analysis of C9orf72 poly(PR) dipeptides.

Balendra R, Ruiz de Los Mozos I, Odeh HM, Glaria I, Milioto C, Wilson KM, Ule AM, Hallegger M, Masino L, Martin S, Patani R, Shorter J, Ule J, Isaacs AM. Balendra R, et al. Among authors: ule am, ule j. Life Sci Alliance. 2023 Jul 12;6(9):e202201824. doi: 10.26508/lsa.202201824. Print 2023 Sep. Life Sci Alliance. 2023. PMID: 37438085 Free PMC article.

3

An ERK1/2-driven RNA-binding switch in nucleolin drives ribosome biogenesis and pancreatic tumorigenesis downstream of RAS oncogene.

Azman MS, Alard EL, Dodel M, Capraro F, Faraway R, Dermit M, Fan W, Chakraborty A, Ule J, Mardakheh FK. Azman MS, et al. Among authors: ule j. EMBO J. 2023 Jun 1;42(11):e110902. doi: 10.15252/embj.2022110902. Epub 2023 Apr 11. EMBO J. 2023. PMID: 37039106 Free PMC article.

4

clipplotr-a comparative visualization and analysis tool for CLIP data.

Chakrabarti AM, Capitanchik C, Ule J, Luscombe NM. Chakrabarti AM, et al. Among authors: ule j. RNA. 2023 Jun;29(6):715-723. doi: 10.1261/rna.079326.122. Epub 2023 Mar 9. RNA. 2023. PMID: 36894192 Free PMC article.

5

HNRNPH1 regulates the neuroprotective cold-shock protein RBM3 expression through poison exon exclusion.

Lin JQ, Khuperkar D, Pavlou S, Makarchuk S, Patikas N, Lee FC, Zbiegly JM, Kang J, Field SF, Bailey DM, Freeman JL, Ule J, Metzakopian E, Ruepp MD, Mallucci GR. Lin JQ, et al. Among authors: ule j. EMBO J. 2023 Jul 17;42(14):e113168. doi: 10.15252/embj.2022113168. Epub 2023 May 30. EMBO J. 2023. PMID: 37248947 Free PMC article.

6

N6-methyladenosine (m6A) reader Pho92 is recruited co-transcriptionally and couples translation to mRNA decay to promote meiotic fitness in yeast.

Varier RA, Sideri T, Capitanchik C, Manova Z, Calvani E, Rossi A, Edupuganti RR, Ensinck I, Chan VWC, Patel H, Kirkpatrick J, Faull P, Snijders AP, Vermeulen M, Ralser M, Ule J, Luscombe NM, van Werven FJ. Varier RA, et al. Among authors: ule j. Elife. 2022 Nov 24;11:e84034. doi: 10.7554/eLife.84034. Elife. 2022. PMID: 36422864 Free PMC article.

7

A computationally-enhanced hiCLIP atlas reveals Staufen1-RNA binding features and links 3' UTR structure to RNA metabolism.

Chakrabarti AM, Iosub IA, Lee FCY, Ule J, Luscombe NM. Chakrabarti AM, et al. Among authors: ule j. Nucleic Acids Res. 2023 May 8;51(8):3573-3589. doi: 10.1093/nar/gkad221. Nucleic Acids Res. 2023. PMID: 37013995 Free PMC article.

8

Data Science Issues in Studying Protein-RNA Interactions with CLIP Technologies.

Chakrabarti AM, Haberman N, Praznik A, Luscombe NM, Ule J. Chakrabarti AM, et al. Among authors: ule j. Annu Rev Biomed Data Sci. 2018 Jul 20;1(1):235-261. doi: 10.1146/annurev-biodatasci-080917-013525. Annu Rev Biomed Data Sci. 2018. PMID: 37123514 Free PMC article.

9

CLIP identifies Nova-regulated RNA networks in the brain.

Ule J, Jensen KB, Ruggiu M, Mele A, Ule A, Darnell RB. Ule J, et al. Among authors: ule a. Science. 2003 Nov 14;302(5648):1212-5. doi: 10.1126/science.1090095. Science. 2003. PMID: 14615540

10

Common molecular pathways mediate long-term potentiation of synaptic excitation and slow synaptic inhibition.

Huang CS, Shi SH, Ule J, Ruggiu M, Barker LA, Darnell RB, Jan YN, Jan LY. Huang CS, et al. Among authors: ule j. Cell. 2005 Oct 7;123(1):105-18. doi: 10.1016/j.cell.2005.07.033. Cell. 2005. PMID: 16213216 Free article.

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