Puchalka J - Search Results

1

Genomotyping of Pseudomonas putida strains using P. putida KT2440-based high-density DNA microarrays: implications for transcriptomics studies.

Ballerstedt H, Volkers RJ, Mars AE, Hallsworth JE, dos Santos VA, Puchalka J, van Duuren J, Eggink G, Timmis KN, de Bont JA, Wery J. Ballerstedt H, et al. Among authors: puchalka j. Appl Microbiol Biotechnol. 2007 Jul;75(5):1133-42. doi: 10.1007/s00253-007-0914-z. Epub 2007 Mar 17. Appl Microbiol Biotechnol. 2007. PMID: 17370070 Free PMC article.

2

Generation of a catR deficient mutant of P. putida KT2440 that produces cis, cis-muconate from benzoate at high rate and yield.

van Duuren JB, Wijte D, Leprince A, Karge B, Puchałka J, Wery J, Dos Santos VA, Eggink G, Mars AE. van Duuren JB, et al. Among authors: puchalka j. J Biotechnol. 2011 Dec 10;156(3):163-72. doi: 10.1016/j.jbiotec.2011.08.030. Epub 2011 Aug 27. J Biotechnol. 2011. PMID: 21906639

3

Reconciling in vivo and in silico key biological parameters of Pseudomonas putida KT2440 during growth on glucose under carbon-limited condition.

van Duuren JB, Puchałka J, Mars AE, Bücker R, Eggink G, Wittmann C, Dos Santos VA. van Duuren JB, et al. Among authors: puchalka j. BMC Biotechnol. 2013 Oct 29;13:93. doi: 10.1186/1472-6750-13-93. BMC Biotechnol. 2013. PMID: 24168623 Free PMC article.

4

Genome-scale reconstruction and analysis of the Pseudomonas putida KT2440 metabolic network facilitates applications in biotechnology.

Puchałka J, Oberhardt MA, Godinho M, Bielecka A, Regenhardt D, Timmis KN, Papin JA, Martins dos Santos VA. Puchałka J, et al. PLoS Comput Biol. 2008 Oct;4(10):e1000210. doi: 10.1371/journal.pcbi.1000210. Epub 2008 Oct 31. PLoS Comput Biol. 2008. PMID: 18974823 Free PMC article.

5

Genotypic and phenotypic analyses of a Pseudomonas aeruginosa chronic bronchiectasis isolate reveal differences from cystic fibrosis and laboratory strains.

Varga JJ, Barbier M, Mulet X, Bielecki P, Bartell JA, Owings JP, Martinez-Ramos I, Hittle LE, Davis MR Jr, Damron FH, Liechti GW, Puchałka J, dos Santos VA, Ernst RK, Papin JA, Albertí S, Oliver A, Goldberg JB. Varga JJ, et al. Among authors: puchalka j. BMC Genomics. 2015 Oct 30;16:883. doi: 10.1186/s12864-015-2069-0. BMC Genomics. 2015. PMID: 26519161 Free PMC article.

6

Characterizing the optimal flux space of genome-scale metabolic reconstructions through modified latin-hypercube sampling.

Chaudhary N, Tøndel K, Bhatnagar R, dos Santos VA, Puchałka J. Chaudhary N, et al. Among authors: puchalka j. Mol Biosyst. 2016 Mar;12(3):994-1005. doi: 10.1039/c5mb00457h. Mol Biosyst. 2016. PMID: 26818782

7

In-vivo expression profiling of Pseudomonas aeruginosa infections reveals niche-specific and strain-independent transcriptional programs.

Bielecki P, Puchałka J, Wos-Oxley ML, Loessner H, Glik J, Kawecki M, Nowak M, Tümmler B, Weiss S, dos Santos VA. Bielecki P, et al. Among authors: puchalka j. PLoS One. 2011;6(9):e24235. doi: 10.1371/journal.pone.0024235. Epub 2011 Sep 12. PLoS One. 2011. PMID: 21931663 Free PMC article.

8

Dissecting the energy metabolism in Mycoplasma pneumoniae through genome-scale metabolic modeling.

Wodke JA, Puchałka J, Lluch-Senar M, Marcos J, Yus E, Godinho M, Gutiérrez-Gallego R, dos Santos VA, Serrano L, Klipp E, Maier T. Wodke JA, et al. Among authors: puchalka j. Mol Syst Biol. 2013;9:653. doi: 10.1038/msb.2013.6. Mol Syst Biol. 2013. PMID: 23549481 Free PMC article.

9

Absence of IFN-beta impairs antigen presentation capacity of splenic dendritic cells via down-regulation of heat shock protein 70.

Zietara N, Łyszkiewicz M, Gekara N, Puchałka J, Dos Santos VA, Hunt CR, Pandita TK, Lienenklaus S, Weiss S. Zietara N, et al. Among authors: puchalka j. J Immunol. 2009 Jul 15;183(2):1099-109. doi: 10.4049/jimmunol.0803214. J Immunol. 2009. PMID: 19581626 Free PMC article.

10

The metabolic response of P. putida KT2442 producing high levels of polyhydroxyalkanoate under single- and multiple-nutrient-limited growth: highlights from a multi-level omics approach.

Poblete-Castro I, Escapa IF, Jäger C, Puchalka J, Lam CM, Schomburg D, Prieto MA, Martins dos Santos VA. Poblete-Castro I, et al. Among authors: puchalka j. Microb Cell Fact. 2012 Mar 20;11:34. doi: 10.1186/1475-2859-11-34. Microb Cell Fact. 2012. PMID: 22433058 Free PMC article.

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