Frey BJ - Search Results

1

A systematic analysis of intronic sequences downstream of 5' splice sites reveals a widespread role for U-rich motifs and TIA1/TIAL1 proteins in alternative splicing regulation.

Aznarez I, Barash Y, Shai O, He D, Zielenski J, Tsui LC, Parkinson J, Frey BJ, Rommens JM, Blencowe BJ. Aznarez I, et al. Among authors: frey bj. Genome Res. 2008 Aug;18(8):1247-58. doi: 10.1101/gr.073155.107. Epub 2008 May 2. Genome Res. 2008. PMID: 18456862 Free PMC article.

2

Functional coordination of alternative splicing in the mammalian central nervous system.

Fagnani M, Barash Y, Ip JY, Misquitta C, Pan Q, Saltzman AL, Shai O, Lee L, Rozenhek A, Mohammad N, Willaime-Morawek S, Babak T, Zhang W, Hughes TR, van der Kooy D, Frey BJ, Blencowe BJ. Fagnani M, et al. Among authors: frey bj. Genome Biol. 2007;8(6):R108. doi: 10.1186/gb-2007-8-6-r108. Genome Biol. 2007. PMID: 17565696 Free PMC article.

3

Deep surveying of alternative splicing complexity in the human transcriptome by high-throughput sequencing.

Pan Q, Shai O, Lee LJ, Frey BJ, Blencowe BJ. Pan Q, et al. Among authors: frey bj. Nat Genet. 2008 Dec;40(12):1413-5. doi: 10.1038/ng.259. Epub 2008 Nov 2. Nat Genet. 2008. PMID: 18978789

4

Model-based detection of alternative splicing signals.

Barash Y, Blencowe BJ, Frey BJ. Barash Y, et al. Among authors: frey bj. Bioinformatics. 2010 Jun 15;26(12):i325-33. doi: 10.1093/bioinformatics/btq200. Bioinformatics. 2010. PMID: 20529924 Free PMC article.

5

Widespread intron retention in mammals functionally tunes transcriptomes.

Braunschweig U, Barbosa-Morais NL, Pan Q, Nachman EN, Alipanahi B, Gonatopoulos-Pournatzis T, Frey B, Irimia M, Blencowe BJ. Braunschweig U, et al. Among authors: frey b. Genome Res. 2014 Nov;24(11):1774-86. doi: 10.1101/gr.177790.114. Epub 2014 Sep 25. Genome Res. 2014. PMID: 25258385 Free PMC article.

6

Revealing global regulatory features of mammalian alternative splicing using a quantitative microarray platform.

Pan Q, Shai O, Misquitta C, Zhang W, Saltzman AL, Mohammad N, Babak T, Siu H, Hughes TR, Morris QD, Frey BJ, Blencowe BJ. Pan Q, et al. Among authors: frey bj. Mol Cell. 2004 Dec 22;16(6):929-41. doi: 10.1016/j.molcel.2004.12.004. Mol Cell. 2004. PMID: 15610736 Free article.

7

Alternative splicing of conserved exons is frequently species-specific in human and mouse.

Pan Q, Bakowski MA, Morris Q, Zhang W, Frey BJ, Hughes TR, Blencowe BJ. Pan Q, et al. Among authors: frey bj. Trends Genet. 2005 Feb;21(2):73-7. doi: 10.1016/j.tig.2004.12.004. Trends Genet. 2005. PMID: 15661351

8

Inferring global levels of alternative splicing isoforms using a generative model of microarray data.

Shai O, Morris QD, Blencowe BJ, Frey BJ. Shai O, et al. Among authors: frey bj. Bioinformatics. 2006 Mar 1;22(5):606-13. doi: 10.1093/bioinformatics/btk028. Epub 2006 Jan 10. Bioinformatics. 2006. PMID: 16403798

9

Quantitative microarray profiling provides evidence against widespread coupling of alternative splicing with nonsense-mediated mRNA decay to control gene expression.

Pan Q, Saltzman AL, Kim YK, Misquitta C, Shai O, Maquat LE, Frey BJ, Blencowe BJ. Pan Q, et al. Among authors: frey bj. Genes Dev. 2006 Jan 15;20(2):153-8. doi: 10.1101/gad.1382806. Genes Dev. 2006. PMID: 16418482 Free PMC article.

10

Deciphering the splicing code.

Barash Y, Calarco JA, Gao W, Pan Q, Wang X, Shai O, Blencowe BJ, Frey BJ. Barash Y, et al. Among authors: frey bj. Nature. 2010 May 6;465(7294):53-9. doi: 10.1038/nature09000. Nature. 2010. PMID: 20445623

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