Oberhardt MA - Search Results

1

Flux balance analysis: interrogating genome-scale metabolic networks.

Oberhardt MA, Chavali AK, Papin JA. Oberhardt MA, et al. Methods Mol Biol. 2009;500:61-80. doi: 10.1007/978-1-59745-525-1_3. Methods Mol Biol. 2009. PMID: 19399432

2

Genome-scale metabolic network analysis of the opportunistic pathogen Pseudomonas aeruginosa PAO1.

Oberhardt MA, Puchałka J, Fryer KE, Martins dos Santos VA, Papin JA. Oberhardt MA, et al. J Bacteriol. 2008 Apr;190(8):2790-803. doi: 10.1128/JB.01583-07. Epub 2008 Jan 11. J Bacteriol. 2008. PMID: 18192387 Free PMC article.

3

Predicting biological system objectives de novo from internal state measurements.

Gianchandani EP, Oberhardt MA, Burgard AP, Maranas CD, Papin JA. Gianchandani EP, et al. Among authors: oberhardt ma. BMC Bioinformatics. 2008 Jan 24;9:43. doi: 10.1186/1471-2105-9-43. BMC Bioinformatics. 2008. PMID: 18218092 Free PMC article.

4

Applications of genome-scale metabolic reconstructions.

Oberhardt MA, Palsson BØ, Papin JA. Oberhardt MA, et al. Mol Syst Biol. 2009;5:320. doi: 10.1038/msb.2009.77. Epub 2009 Nov 3. Mol Syst Biol. 2009. PMID: 19888215 Free PMC article. Review.

5

Reconciliation of genome-scale metabolic reconstructions for comparative systems analysis.

Oberhardt MA, Puchałka J, Martins dos Santos VA, Papin JA. Oberhardt MA, et al. PLoS Comput Biol. 2011 Mar;7(3):e1001116. doi: 10.1371/journal.pcbi.1001116. Epub 2011 Mar 31. PLoS Comput Biol. 2011. PMID: 21483480 Free PMC article.

6

Multiscale computational analysis of Xenopus laevis morphogenesis reveals key insights of systems-level behavior.

Robertson SH, Smith CK, Langhans AL, McLinden SE, Oberhardt MA, Jakab KR, Dzamba B, DeSimone DW, Papin JA, Peirce SM. Robertson SH, et al. Among authors: oberhardt ma. BMC Syst Biol. 2007 Oct 22;1:46. doi: 10.1186/1752-0509-1-46. BMC Syst Biol. 2007. PMID: 17953751 Free PMC article.

7

Genome-scale reconstruction and analysis of the Pseudomonas putida KT2440 metabolic network facilitates applications in biotechnology.

Puchałka J, Oberhardt MA, Godinho M, Bielecka A, Regenhardt D, Timmis KN, Papin JA, Martins dos Santos VA. Puchałka J, et al. Among authors: oberhardt ma. PLoS Comput Biol. 2008 Oct;4(10):e1000210. doi: 10.1371/journal.pcbi.1000210. Epub 2008 Oct 31. PLoS Comput Biol. 2008. PMID: 18974823 Free PMC article.

8

Metabolic network analysis of Pseudomonas aeruginosa during chronic cystic fibrosis lung infection.

Oberhardt MA, Goldberg JB, Hogardt M, Papin JA. Oberhardt MA, et al. J Bacteriol. 2010 Oct;192(20):5534-48. doi: 10.1128/JB.00900-10. Epub 2010 Aug 13. J Bacteriol. 2010. PMID: 20709898 Free PMC article.

9

Systems analysis of small signaling modules relevant to eight human diseases.

Benedict KF, Mac Gabhann F, Amanfu RK, Chavali AK, Gianchandani EP, Glaw LS, Oberhardt MA, Thorne BC, Yang JH, Papin JA, Peirce SM, Saucerman JJ, Skalak TC. Benedict KF, et al. Among authors: oberhardt ma. Ann Biomed Eng. 2011 Feb;39(2):621-35. doi: 10.1007/s10439-010-0208-y. Epub 2010 Dec 4. Ann Biomed Eng. 2011. PMID: 21132372 Free PMC article.

10

Genome-scale modeling and human disease: an overview.

Oberhardt MA, Gianchandani EP. Oberhardt MA, et al. Front Physiol. 2015 Jan 23;5:527. doi: 10.3389/fphys.2014.00527. eCollection 2014. Front Physiol. 2015. PMID: 25667572 Free PMC article. No abstract available.

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