Marcotte EM - Search Results

1

Mining gene functional networks to improve mass-spectrometry-based protein identification.

Ramakrishnan SR, Vogel C, Kwon T, Penalva LO, Marcotte EM, Miranker DP. Ramakrishnan SR, et al. Among authors: marcotte em. Bioinformatics. 2009 Nov 15;25(22):2955-61. doi: 10.1093/bioinformatics/btp461. Epub 2009 Jul 24. Bioinformatics. 2009. PMID: 19633097 Free PMC article.

2

Diametrical clustering for identifying anti-correlated gene clusters.

Dhillon IS, Marcotte EM, Roshan U. Dhillon IS, et al. Among authors: marcotte em. Bioinformatics. 2003 Sep 1;19(13):1612-9. doi: 10.1093/bioinformatics/btg209. Bioinformatics. 2003. PMID: 12967956

3

Predicting functional linkages from gene fusions with confidence.

Marcotte CJ, Marcotte EM. Marcotte CJ, et al. Among authors: marcotte em. Appl Bioinformatics. 2002;1(2):93-100. Appl Bioinformatics. 2002. PMID: 15130848

4

Protein function prediction using the Protein Link EXplorer (PLEX).

Date SV, Marcotte EM. Date SV, et al. Among authors: marcotte em. Bioinformatics. 2005 May 15;21(10):2558-9. doi: 10.1093/bioinformatics/bti313. Epub 2005 Feb 8. Bioinformatics. 2005. PMID: 15701682

5

Mass spectrometry of the M. smegmatis proteome: protein expression levels correlate with function, operons, and codon bias.

Wang R, Prince JT, Marcotte EM. Wang R, et al. Among authors: marcotte em. Genome Res. 2005 Aug;15(8):1118-26. doi: 10.1101/gr.3994105. Genome Res. 2005. PMID: 16077011 Free PMC article.

6

A fast coarse filtering method for peptide identification by mass spectrometry.

Ramakrishnan SR, Mao R, Nakorchevskiy AA, Prince JT, Willard WS, Xu W, Marcotte EM, Miranker DP. Ramakrishnan SR, et al. Among authors: marcotte em. Bioinformatics. 2006 Jun 15;22(12):1524-31. doi: 10.1093/bioinformatics/btl118. Epub 2006 Apr 3. Bioinformatics. 2006. PMID: 16585069

7

Chromatographic alignment of ESI-LC-MS proteomics data sets by ordered bijective interpolated warping.

Prince JT, Marcotte EM. Prince JT, et al. Among authors: marcotte em. Anal Chem. 2006 Sep 1;78(17):6140-52. doi: 10.1021/ac0605344. Anal Chem. 2006. PMID: 16944896

8

Absolute protein expression profiling estimates the relative contributions of transcriptional and translational regulation.

Lu P, Vogel C, Wang R, Yao X, Marcotte EM. Lu P, et al. Among authors: marcotte em. Nat Biotechnol. 2007 Jan;25(1):117-24. doi: 10.1038/nbt1270. Epub 2006 Dec 24. Nat Biotechnol. 2007. PMID: 17187058

9

A map of human protein interactions derived from co-expression of human mRNAs and their orthologs.

Ramani AK, Li Z, Hart GT, Carlson MW, Boutz DR, Marcotte EM. Ramani AK, et al. Among authors: marcotte em. Mol Syst Biol. 2008;4:180. doi: 10.1038/msb.2008.19. Epub 2008 Apr 15. Mol Syst Biol. 2008. PMID: 18414481 Free PMC article.

10

Integrating functional genomics data.

Lee I, Marcotte EM. Lee I, et al. Among authors: marcotte em. Methods Mol Biol. 2008;453:267-78. doi: 10.1007/978-1-60327-429-6_14. Methods Mol Biol. 2008. PMID: 18712309

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