Papin JA - Search Results

1

A scalable systems analysis approach for regulated metabolic networks.

Jensen PA, Papin JA. Jensen PA, et al. Among authors: papin ja. Annu Int Conf IEEE Eng Med Biol Soc. 2009;2009:5464-5. doi: 10.1109/IEMBS.2009.5334060. Annu Int Conf IEEE Eng Med Biol Soc. 2009. PMID: 19964682

2

Systems analyses characterize integrated functions of biochemical networks.

Gianchandani EP, Brautigan DL, Papin JA. Gianchandani EP, et al. Among authors: papin ja. Trends Biochem Sci. 2006 May;31(5):284-91. doi: 10.1016/j.tibs.2006.03.007. Epub 2006 Apr 17. Trends Biochem Sci. 2006. PMID: 16616498 Review.

3

Flux balance analysis in the era of metabolomics.

Lee JM, Gianchandani EP, Papin JA. Lee JM, et al. Among authors: papin ja. Brief Bioinform. 2006 Jun;7(2):140-50. doi: 10.1093/bib/bbl007. Epub 2006 Apr 26. Brief Bioinform. 2006. PMID: 16772264 Review.

4

Matrix formalism to describe functional states of transcriptional regulatory systems.

Gianchandani EP, Papin JA, Price ND, Joyce AR, Palsson BO. Gianchandani EP, et al. Among authors: papin ja. PLoS Comput Biol. 2006 Aug 11;2(8):e101. doi: 10.1371/journal.pcbi.0020101. PLoS Comput Biol. 2006. PMID: 16895435 Free PMC article.

5

Mechanistic exploration of phthalimide neovascular factor 1 using network analysis tools.

Wieghaus KA, Gianchandani EP, Brown ML, Papin JA, Botchwey EA. Wieghaus KA, et al. Among authors: papin ja. Tissue Eng. 2007 Oct;13(10):2561-75. doi: 10.1089/ten.2007.0023. Tissue Eng. 2007. PMID: 17723106 Free PMC article.

6

Multiscale computational analysis of Xenopus laevis morphogenesis reveals key insights of systems-level behavior.

Robertson SH, Smith CK, Langhans AL, McLinden SE, Oberhardt MA, Jakab KR, Dzamba B, DeSimone DW, Papin JA, Peirce SM. Robertson SH, et al. Among authors: papin ja. BMC Syst Biol. 2007 Oct 22;1:46. doi: 10.1186/1752-0509-1-46. BMC Syst Biol. 2007. PMID: 17953751 Free PMC article.

7

Dynamic analysis of integrated signaling, metabolic, and regulatory networks.

Lee JM, Gianchandani EP, Eddy JA, Papin JA. Lee JM, et al. Among authors: papin ja. PLoS Comput Biol. 2008 May 23;4(5):e1000086. doi: 10.1371/journal.pcbi.1000086. PLoS Comput Biol. 2008. PMID: 18483615 Free PMC article.

8

Flux balance analysis: interrogating genome-scale metabolic networks.

Oberhardt MA, Chavali AK, Papin JA. Oberhardt MA, et al. Among authors: papin ja. Methods Mol Biol. 2009;500:61-80. doi: 10.1007/978-1-59745-525-1_3. Methods Mol Biol. 2009. PMID: 19399432

9

Functional states of the genome-scale Escherichia coli transcriptional regulatory system.

Gianchandani EP, Joyce AR, Palsson BØ, Papin JA. Gianchandani EP, et al. Among authors: papin ja. PLoS Comput Biol. 2009 Jun;5(6):e1000403. doi: 10.1371/journal.pcbi.1000403. Epub 2009 Jun 5. PLoS Comput Biol. 2009. PMID: 19503608 Free PMC article.

10

Metabolic network analysis integrated with transcript verification for sequenced genomes.

Manichaikul A, Ghamsari L, Hom EF, Lin C, Murray RR, Chang RL, Balaji S, Hao T, Shen Y, Chavali AK, Thiele I, Yang X, Fan C, Mello E, Hill DE, Vidal M, Salehi-Ashtiani K, Papin JA. Manichaikul A, et al. Among authors: papin ja. Nat Methods. 2009 Aug;6(8):589-92. doi: 10.1038/nmeth.1348. Epub 2009 Jul 13. Nat Methods. 2009. PMID: 19597503 Free PMC article.

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