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Unique signatures of long noncoding RNA expression in response to virus infection and altered innate immune signaling.
mBio. 2010 Oct 26;1(5):e00206-10. doi: 10.1128/mBio.00206-10.
mBio. 2010.
PMID: 20978541
Free PMC article.
NSR-seq transcriptional profiling enables identification of a gene signature of Plasmodium falciparum parasites infecting children.
Vignali M, Armour CD, Chen J, Morrison R, Castle JC, Biery MC, Bouzek H, Moon W, Babak T, Fried M, Raymond CK, Duffy PE.
Vignali M, et al.
J Clin Invest. 2011 Mar;121(3):1119-29. doi: 10.1172/JCI43457. Epub 2011 Feb 7.
J Clin Invest. 2011.
PMID: 21317536
Free PMC article.
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DNA copy number, including telomeres and mitochondria, assayed using next-generation sequencing.
Castle JC, Biery M, Bouzek H, Xie T, Chen R, Misura K, Jackson S, Armour CD, Johnson JM, Rohl CA, Raymond CK.
Castle JC, et al.
BMC Genomics. 2010 Apr 16;11:244. doi: 10.1186/1471-2164-11-244.
BMC Genomics. 2010.
PMID: 20398377
Free PMC article.
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Digital genome-wide ncRNA expression, including SnoRNAs, across 11 human tissues using polyA-neutral amplification.
Castle JC, Armour CD, Löwer M, Haynor D, Biery M, Bouzek H, Chen R, Jackson S, Johnson JM, Rohl CA, Raymond CK.
Castle JC, et al.
PLoS One. 2010 Jul 26;5(7):e11779. doi: 10.1371/journal.pone.0011779.
PLoS One. 2010.
PMID: 20668672
Free PMC article.
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Comparison of Major and Minor Viral SNPs Identified through Single Template Sequencing and Pyrosequencing in Acute HIV-1 Infection.
Iyer S, Casey E, Bouzek H, Kim M, Deng W, Larsen BB, Zhao H, Bumgarner RE, Rolland M, Mullins JI.
Iyer S, et al.
PLoS One. 2015 Aug 28;10(8):e0135903. doi: 10.1371/journal.pone.0135903. eCollection 2015.
PLoS One. 2015.
PMID: 26317928
Free PMC article.
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Quality score based identification and correction of pyrosequencing errors.
Iyer S, Bouzek H, Deng W, Larsen B, Casey E, Mullins JI.
Iyer S, et al.
PLoS One. 2013 Sep 5;8(9):e73015. doi: 10.1371/journal.pone.0073015. eCollection 2013.
PLoS One. 2013.
PMID: 24039850
Free PMC article.
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Eukaryotic signature proteins of Prosthecobacter dejongeii and Gemmata sp. Wa-1 as revealed by in silico analysis.
Staley JT, Bouzek H, Jenkins C.
Staley JT, et al.
FEMS Microbiol Lett. 2005 Feb 1;243(1):9-14. doi: 10.1016/j.femsle.2004.11.034.
FEMS Microbiol Lett. 2005.
PMID: 15667994
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Differential patterns of allelic loss in estrogen receptor-positive infiltrating lobular and ductal breast cancer.
Loo LW, Ton C, Wang YW, Grove DI, Bouzek H, Vartanian N, Lin MG, Yuan X, Lawton TL, Daling JR, Malone KE, Li CI, Hsu L, Porter PL.
Loo LW, et al.
Genes Chromosomes Cancer. 2008 Dec;47(12):1049-66. doi: 10.1002/gcc.20610.
Genes Chromosomes Cancer. 2008.
PMID: 18720524
Free PMC article.
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