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Quantitative reactivity profiling predicts functional cysteines in proteomes.
Weerapana E, Wang C, Simon GM, Richter F, Khare S, Dillon MB, Bachovchin DA, Mowen K, Baker D, Cravatt BF. Weerapana E, et al. Among authors: baker d. Nature. 2010 Dec 9;468(7325):790-5. doi: 10.1038/nature09472. Epub 2010 Nov 17. Nature. 2010. PMID: 21085121 Free PMC article.
Improved side-chain modeling for protein-protein docking.
Wang C, Schueler-Furman O, Baker D. Wang C, et al. Among authors: baker d. Protein Sci. 2005 May;14(5):1328-39. doi: 10.1110/ps.041222905. Epub 2005 Mar 31. Protein Sci. 2005. PMID: 15802647 Free PMC article.
Protein-protein docking with backbone flexibility.
Wang C, Bradley P, Baker D. Wang C, et al. Among authors: baker d. J Mol Biol. 2007 Oct 19;373(2):503-19. doi: 10.1016/j.jmb.2007.07.050. Epub 2007 Aug 2. J Mol Biol. 2007. PMID: 17825317
De novo enzyme design using Rosetta3.
Richter F, Leaver-Fay A, Khare SD, Bjelic S, Baker D. Richter F, et al. Among authors: baker d. PLoS One. 2011;6(5):e19230. doi: 10.1371/journal.pone.0019230. Epub 2011 May 16. PLoS One. 2011. PMID: 21603656 Free PMC article.
Computational design of catalytic dyads and oxyanion holes for ester hydrolysis.
Richter F, Blomberg R, Khare SD, Kiss G, Kuzin AP, Smith AJ, Gallaher J, Pianowski Z, Helgeson RC, Grjasnow A, Xiao R, Seetharaman J, Su M, Vorobiev S, Lew S, Forouhar F, Kornhaber GJ, Hunt JF, Montelione GT, Tong L, Houk KN, Hilvert D, Baker D. Richter F, et al. Among authors: baker d. J Am Chem Soc. 2012 Oct 3;134(39):16197-206. doi: 10.1021/ja3037367. Epub 2012 Sep 21. J Am Chem Soc. 2012. PMID: 22871159 Free PMC article.
5,660 results