Baker D - Search Results

1

Cryo-EM structure of a group II chaperonin in the prehydrolysis ATP-bound state leading to lid closure.

Zhang J, Ma B, DiMaio F, Douglas NR, Joachimiak LA, Baker D, Frydman J, Levitt M, Chiu W. Zhang J, et al. Among authors: baker d. Structure. 2011 May 11;19(5):633-9. doi: 10.1016/j.str.2011.03.005. Structure. 2011. PMID: 21565698 Free PMC article.

2

Hierarchy of structure loss in MD simulations of src SH3 domain unfolding.

Tsai J, Levitt M, Baker D. Tsai J, et al. Among authors: baker d. J Mol Biol. 1999 Aug 6;291(1):215-25. doi: 10.1006/jmbi.1999.2949. J Mol Biol. 1999. PMID: 10438616

3

Computational redesign of protein-protein interaction specificity.

Kortemme T, Joachimiak LA, Bullock AN, Schuler AD, Stoddard BL, Baker D. Kortemme T, et al. Among authors: baker d. Nat Struct Mol Biol. 2004 Apr;11(4):371-9. doi: 10.1038/nsmb749. Epub 2004 Mar 21. Nat Struct Mol Biol. 2004. PMID: 15034550

4

Computational design of a new hydrogen bond network and at least a 300-fold specificity switch at a protein-protein interface.

Joachimiak LA, Kortemme T, Stoddard BL, Baker D. Joachimiak LA, et al. Among authors: baker d. J Mol Biol. 2006 Aug 4;361(1):195-208. doi: 10.1016/j.jmb.2006.05.022. Epub 2006 May 24. J Mol Biol. 2006. PMID: 16831445

5

Ab initio modeling of the herpesvirus VP26 core domain assessed by CryoEM density.

Baker ML, Jiang W, Wedemeyer WJ, Rixon FJ, Baker D, Chiu W. Baker ML, et al. Among authors: baker d. PLoS Comput Biol. 2006 Oct 27;2(10):e146. doi: 10.1371/journal.pcbi.0020146. Epub 2006 Sep 27. PLoS Comput Biol. 2006. PMID: 17069457 Free PMC article.

6

Experimental and computational analyses of the energetic basis for dual recognition of immunity proteins by colicin endonucleases.

Keeble AH, Joachimiak LA, Maté MJ, Meenan N, Kirkpatrick N, Baker D, Kleanthous C. Keeble AH, et al. Among authors: baker d. J Mol Biol. 2008 Jun 13;379(4):745-59. doi: 10.1016/j.jmb.2008.03.055. Epub 2008 Apr 3. J Mol Biol. 2008. PMID: 18471830

7

Refinement of protein structures into low-resolution density maps using rosetta.

DiMaio F, Tyka MD, Baker ML, Chiu W, Baker D. DiMaio F, et al. Among authors: baker d, baker ml. J Mol Biol. 2009 Sep 11;392(1):181-90. doi: 10.1016/j.jmb.2009.07.008. Epub 2009 Jul 8. J Mol Biol. 2009. PMID: 19596339 Free PMC article.

8

Structure prediction for CASP8 with all-atom refinement using Rosetta.

Raman S, Vernon R, Thompson J, Tyka M, Sadreyev R, Pei J, Kim D, Kellogg E, DiMaio F, Lange O, Kinch L, Sheffler W, Kim BH, Das R, Grishin NV, Baker D. Raman S, et al. Among authors: baker d. Proteins. 2009;77 Suppl 9(0 9):89-99. doi: 10.1002/prot.22540. Proteins. 2009. PMID: 19701941 Free PMC article.

9

Alternate states of proteins revealed by detailed energy landscape mapping.

Tyka MD, Keedy DA, André I, Dimaio F, Song Y, Richardson DC, Richardson JS, Baker D. Tyka MD, et al. Among authors: baker d. J Mol Biol. 2011 Jan 14;405(2):607-18. doi: 10.1016/j.jmb.2010.11.008. Epub 2010 Nov 10. J Mol Biol. 2011. PMID: 21073878 Free PMC article.

10

Structural basis for scaffolding-mediated assembly and maturation of a dsDNA virus.

Chen DH, Baker ML, Hryc CF, DiMaio F, Jakana J, Wu W, Dougherty M, Haase-Pettingell C, Schmid MF, Jiang W, Baker D, King JA, Chiu W. Chen DH, et al. Among authors: baker d, baker ml. Proc Natl Acad Sci U S A. 2011 Jan 25;108(4):1355-60. doi: 10.1073/pnas.1015739108. Epub 2011 Jan 10. Proc Natl Acad Sci U S A. 2011. PMID: 21220301 Free PMC article.

Save citations to file

Email citations

Send citations to clipboard

Add to Collections

Add to My Bibliography

Create a file for external citation management software

Your saved search

Your RSS Feed

My NCBI Filters

Text availability

Article attribute

Article type

Publication date

5,661 results

Search Page