Cuppen E - Search Results

1

Integrated genome-wide analysis of transcription factor occupancy, RNA polymerase II binding and steady-state RNA levels identify differentially regulated functional gene classes.

Mokry M, Hatzis P, Schuijers J, Lansu N, Ruzius FP, Clevers H, Cuppen E. Mokry M, et al. Among authors: cuppen e. Nucleic Acids Res. 2012 Jan;40(1):148-58. doi: 10.1093/nar/gkr720. Epub 2011 Sep 13. Nucleic Acids Res. 2012. PMID: 21914722 Free PMC article.

2

The Wnt/beta-catenin pathway regulates cardiac valve formation.

Hurlstone AF, Haramis AP, Wienholds E, Begthel H, Korving J, Van Eeden F, Cuppen E, Zivkovic D, Plasterk RH, Clevers H. Hurlstone AF, et al. Among authors: cuppen e. Nature. 2003 Oct 9;425(6958):633-7. doi: 10.1038/nature02028. Nature. 2003. PMID: 14534590 Free article.

3

CONREAL web server: identification and visualization of conserved transcription factor binding sites.

Berezikov E, Guryev V, Cuppen E. Berezikov E, et al. Among authors: cuppen e. Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W447-50. doi: 10.1093/nar/gki378. Nucleic Acids Res. 2005. PMID: 15980509 Free PMC article.

4

Cloning and expression of new microRNAs from zebrafish.

Kloosterman WP, Steiner FA, Berezikov E, de Bruijn E, van de Belt J, Verheul M, Cuppen E, Plasterk RH. Kloosterman WP, et al. Among authors: cuppen e. Nucleic Acids Res. 2006 May 12;34(9):2558-69. doi: 10.1093/nar/gkl278. Print 2006. Nucleic Acids Res. 2006. PMID: 16698962 Free PMC article.

5

Genome-wide pattern of TCF7L2/TCF4 chromatin occupancy in colorectal cancer cells.

Hatzis P, van der Flier LG, van Driel MA, Guryev V, Nielsen F, Denissov S, Nijman IJ, Koster J, Santo EE, Welboren W, Versteeg R, Cuppen E, van de Wetering M, Clevers H, Stunnenberg HG. Hatzis P, et al. Among authors: cuppen e. Mol Cell Biol. 2008 Apr;28(8):2732-44. doi: 10.1128/MCB.02175-07. Epub 2008 Feb 11. Mol Cell Biol. 2008. PMID: 18268006 Free PMC article.

6

The Atp1a1 gene from inbred Dahl salt sensitive rats does not contain the A1079T missense transversion.

Mokry M, Cuppen E. Mokry M, et al. Among authors: cuppen e. Hypertension. 2008 Apr;51(4):922-7. doi: 10.1161/HYPERTENSIONAHA.107.108415. Epub 2008 Feb 19. Hypertension. 2008. PMID: 18285611

7

Alkylation damage causes MMR-dependent chromosomal instability in vertebrate embryos.

Feitsma H, Akay A, Cuppen E. Feitsma H, et al. Among authors: cuppen e. Nucleic Acids Res. 2008 Jul;36(12):4047-56. doi: 10.1093/nar/gkn341. Epub 2008 Jun 3. Nucleic Acids Res. 2008. PMID: 18522974 Free PMC article.

8

Accurate SNP and mutation detection by targeted custom microarray-based genomic enrichment of short-fragment sequencing libraries.

Mokry M, Feitsma H, Nijman IJ, de Bruijn E, van der Zaag PJ, Guryev V, Cuppen E. Mokry M, et al. Among authors: cuppen e. Nucleic Acids Res. 2010 Jun;38(10):e116. doi: 10.1093/nar/gkq072. Epub 2010 Feb 17. Nucleic Acids Res. 2010. PMID: 20164091 Free PMC article.

9

Comparing genome-wide chromatin profiles using ChIP-chip or ChIP-seq.

Johannes F, Wardenaar R, Colomé-Tatché M, Mousson F, de Graaf P, Mokry M, Guryev V, Timmers HT, Cuppen E, Jansen RC. Johannes F, et al. Among authors: cuppen e. Bioinformatics. 2010 Apr 15;26(8):1000-6. doi: 10.1093/bioinformatics/btq087. Epub 2010 Mar 5. Bioinformatics. 2010. PMID: 20208068 Free article.

10

Mutation discovery by targeted genomic enrichment of multiplexed barcoded samples.

Nijman IJ, Mokry M, van Boxtel R, Toonen P, de Bruijn E, Cuppen E. Nijman IJ, et al. Among authors: cuppen e. Nat Methods. 2010 Nov;7(11):913-5. doi: 10.1038/nmeth.1516. Epub 2010 Oct 17. Nat Methods. 2010. PMID: 20953175

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