Pratt D - Search Results

1

A network-based approach to quantifying the impact of biologically active substances.

Hoeng J, Deehan R, Pratt D, Martin F, Sewer A, Thomson TM, Drubin DA, Waters CA, de Graaf D, Peitsch MC. Hoeng J, et al. Among authors: pratt d. Drug Discov Today. 2012 May;17(9-10):413-8. doi: 10.1016/j.drudis.2011.11.008. Epub 2011 Dec 2. Drug Discov Today. 2012. PMID: 22155224 No abstract available.

2

Assessment of network perturbation amplitudes by applying high-throughput data to causal biological networks.

Martin F, Thomson TM, Sewer A, Drubin DA, Mathis C, Weisensee D, Pratt D, Hoeng J, Peitsch MC. Martin F, et al. Among authors: pratt d. BMC Syst Biol. 2012 May 31;6:54. doi: 10.1186/1752-0509-6-54. BMC Syst Biol. 2012. PMID: 22651900 Free PMC article.

3

On Crowd-verification of Biological Networks.

sbv IMPROVER project team (in alphabetical order); Ansari S, Binder J, Boue S, Di Fabio A, Hayes W, Hoeng J, Iskandar A, Kleiman R, Norel R, O'Neel B, Peitsch MC, Poussin C, Pratt D, Rhrissorrakrai K, Schlage WK, Stolovitzky G, Talikka M. sbv IMPROVER project team (in alphabetical order), et al. Among authors: pratt d. Bioinform Biol Insights. 2013 Oct 10;7:307-25. doi: 10.4137/BBI.S12932. eCollection 2013. Bioinform Biol Insights. 2013. PMID: 24151423 Free PMC article.

4

Reverse causal reasoning: applying qualitative causal knowledge to the interpretation of high-throughput data.

Catlett NL, Bargnesi AJ, Ungerer S, Seagaran T, Ladd W, Elliston KO, Pratt D. Catlett NL, et al. Among authors: pratt d. BMC Bioinformatics. 2013 Nov 23;14:340. doi: 10.1186/1471-2105-14-340. BMC Bioinformatics. 2013. PMID: 24266983 Free PMC article.

5

Causal reasoning identifies mechanisms of sensitivity for a novel AKT kinase inhibitor, GSK690693.

Kumar R, Blakemore SJ, Ellis CE, Petricoin EF 3rd, Pratt D, Macoritto M, Matthews AL, Loureiro JJ, Elliston K. Kumar R, et al. Among authors: pratt d. BMC Genomics. 2010 Jul 6;11:419. doi: 10.1186/1471-2164-11-419. BMC Genomics. 2010. PMID: 20604938 Free PMC article.

6

Computational causal reasoning models of mechanisms of androgen stimulation in prostate cancer.

Pratt D, Hahn W, Matthews A, Febbo P, Berger R, Duckworth B, Levy J, Segaran T, Sun J, Ladd B, Elliston K. Pratt D, et al. Conf Proc IEEE Eng Med Biol Soc. 2006;2006:38. doi: 10.1109/IEMBS.2006.259460. Conf Proc IEEE Eng Med Biol Soc. 2006. PMID: 17946775 No abstract available.

7

NDEx, the Network Data Exchange.

Pratt D, Chen J, Welker D, Rivas R, Pillich R, Rynkov V, Ono K, Miello C, Hicks L, Szalma S, Stojmirovic A, Dobrin R, Braxenthaler M, Kuentzer J, Demchak B, Ideker T. Pratt D, et al. Cell Syst. 2015 Oct 28;1(4):302-305. doi: 10.1016/j.cels.2015.10.001. Cell Syst. 2015. PMID: 26594663 Free PMC article.

8

DDOT: A Swiss Army Knife for Investigating Data-Driven Biological Ontologies.

Yu MK, Ma J, Ono K, Zheng F, Fong SH, Gary A, Chen J, Demchak B, Pratt D, Ideker T. Yu MK, et al. Among authors: pratt d. Cell Syst. 2019 Mar 27;8(3):267-273.e3. doi: 10.1016/j.cels.2019.02.003. Epub 2019 Mar 13. Cell Syst. 2019. PMID: 30878356 Free PMC article.

9

NDEx 2.0: A Clearinghouse for Research on Cancer Pathways.

Pratt D, Chen J, Pillich R, Rynkov V, Gary A, Demchak B, Ideker T. Pratt D, et al. Cancer Res. 2017 Nov 1;77(21):e58-e61. doi: 10.1158/0008-5472.CAN-17-0606. Cancer Res. 2017. PMID: 29092941 Free PMC article.

10

NDEx: A Community Resource for Sharing and Publishing of Biological Networks.

Pillich RT, Chen J, Rynkov V, Welker D, Pratt D. Pillich RT, et al. Among authors: pratt d. Methods Mol Biol. 2017;1558:271-301. doi: 10.1007/978-1-4939-6783-4_13. Methods Mol Biol. 2017. PMID: 28150243

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