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Implementing an X-ray validation pipeline for the Protein Data Bank.
Gore S, Velankar S, Kleywegt GJ. Gore S, et al. Among authors: kleywegt gj. Acta Crystallogr D Biol Crystallogr. 2012 Apr;68(Pt 4):478-83. doi: 10.1107/S0907444911050359. Epub 2012 Mar 16. Acta Crystallogr D Biol Crystallogr. 2012. PMID: 22505268 Free PMC article.
Databases in protein crystallography.
Kleywegt GJ, Jones TA. Kleywegt GJ, et al. Acta Crystallogr D Biol Crystallogr. 1998 Nov 1;54(Pt 6 Pt 1):1119-31. doi: 10.1107/s0907444998007100. Acta Crystallogr D Biol Crystallogr. 1998. PMID: 10089488 Review.
Validation of protein crystal structures.
Kleywegt GJ. Kleywegt GJ. Acta Crystallogr D Biol Crystallogr. 2000 Mar;56(Pt 3):249-65. doi: 10.1107/s0907444999016364. Acta Crystallogr D Biol Crystallogr. 2000. PMID: 10713511 Review.
The Uppsala Electron-Density Server.
Kleywegt GJ, Harris MR, Zou JY, Taylor TC, Wählby A, Jones TA. Kleywegt GJ, et al. Acta Crystallogr D Biol Crystallogr. 2004 Dec;60(Pt 12 Pt 1):2240-9. doi: 10.1107/S0907444904013253. Epub 2004 Nov 26. Acta Crystallogr D Biol Crystallogr. 2004. PMID: 15572777
On vital aid: the why, what and how of validation.
Kleywegt GJ. Kleywegt GJ. Acta Crystallogr D Biol Crystallogr. 2009 Feb;65(Pt 2):134-9. doi: 10.1107/S090744490900081X. Epub 2009 Jan 20. Acta Crystallogr D Biol Crystallogr. 2009. PMID: 19171968 Free PMC article.
Case-controlled structure validation.
Read RJ, Kleywegt GJ. Read RJ, et al. Among authors: kleywegt gj. Acta Crystallogr D Biol Crystallogr. 2009 Feb;65(Pt 2):140-7. doi: 10.1107/S0907444908041085. Epub 2009 Jan 20. Acta Crystallogr D Biol Crystallogr. 2009. PMID: 19171969 Free PMC article.
PDBe: Protein Data Bank in Europe.
Velankar S, Best C, Beuth B, Boutselakis CH, Cobley N, Sousa Da Silva AW, Dimitropoulos D, Golovin A, Hirshberg M, John M, Krissinel EB, Newman R, Oldfield T, Pajon A, Penkett CJ, Pineda-Castillo J, Sahni G, Sen S, Slowley R, Suarez-Uruena A, Swaminathan J, van Ginkel G, Vranken WF, Henrick K, Kleywegt GJ. Velankar S, et al. Among authors: kleywegt gj. Nucleic Acids Res. 2010 Jan;38(Database issue):D308-17. doi: 10.1093/nar/gkp916. Epub 2009 Oct 25. Nucleic Acids Res. 2010. PMID: 19858099 Free PMC article.
Straightforward and complete deposition of NMR data to the PDBe.
Penkett CJ, van Ginkel G, Velankar S, Swaminathan J, Ulrich EL, Mading S, Stevens TJ, Fogh RH, Gutmanas A, Kleywegt GJ, Henrick K, Vranken WF. Penkett CJ, et al. Among authors: kleywegt gj. J Biomol NMR. 2010 Oct;48(2):85-92. doi: 10.1007/s10858-010-9439-3. Epub 2010 Aug 3. J Biomol NMR. 2010. PMID: 20680401 Free PMC article.
EMDataBank.org: unified data resource for CryoEM.
Lawson CL, Baker ML, Best C, Bi C, Dougherty M, Feng P, van Ginkel G, Devkota B, Lagerstedt I, Ludtke SJ, Newman RH, Oldfield TJ, Rees I, Sahni G, Sala R, Velankar S, Warren J, Westbrook JD, Henrick K, Kleywegt GJ, Berman HM, Chiu W. Lawson CL, et al. Among authors: kleywegt gj. Nucleic Acids Res. 2011 Jan;39(Database issue):D456-64. doi: 10.1093/nar/gkq880. Epub 2010 Oct 8. Nucleic Acids Res. 2011. PMID: 20935055 Free PMC article.
141 results