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Amino acid coevolution induces an evolutionary Stokes shift.
Pollock DD, Thiltgen G, Goldstein RA. Pollock DD, et al. Among authors: goldstein ra. Proc Natl Acad Sci U S A. 2012 May 22;109(21):E1352-9. doi: 10.1073/pnas.1120084109. Epub 2012 Apr 30. Proc Natl Acad Sci U S A. 2012. PMID: 22547823 Free PMC article.
Nonadaptive Amino Acid Convergence Rates Decrease over Time.
Goldstein RA, Pollard ST, Shah SD, Pollock DD. Goldstein RA, et al. Mol Biol Evol. 2015 Jun;32(6):1373-81. doi: 10.1093/molbev/msv041. Epub 2015 Mar 3. Mol Biol Evol. 2015. PMID: 25737491 Free PMC article.
The tangled bank of amino acids.
Goldstein RA, Pollock DD. Goldstein RA, et al. Protein Sci. 2016 Jul;25(7):1354-62. doi: 10.1002/pro.2930. Epub 2016 May 12. Protein Sci. 2016. PMID: 27028523 Free PMC article.
Strong evidence for protein epistasis, weak evidence against it.
Pollock DD, Goldstein RA. Pollock DD, et al. Among authors: goldstein ra. Proc Natl Acad Sci U S A. 2014 Apr 15;111(15):E1450. doi: 10.1073/pnas.1401112111. Epub 2014 Mar 20. Proc Natl Acad Sci U S A. 2014. PMID: 24706894 Free PMC article. No abstract available.
The interface of protein structure, protein biophysics, and molecular evolution.
Liberles DA, Teichmann SA, Bahar I, Bastolla U, Bloom J, Bornberg-Bauer E, Colwell LJ, de Koning AP, Dokholyan NV, Echave J, Elofsson A, Gerloff DL, Goldstein RA, Grahnen JA, Holder MT, Lakner C, Lartillot N, Lovell SC, Naylor G, Perica T, Pollock DD, Pupko T, Regan L, Roger A, Rubinstein N, Shakhnovich E, Sjölander K, Sunyaev S, Teufel AI, Thorne JL, Thornton JW, Weinreich DM, Whelan S. Liberles DA, et al. Among authors: goldstein ra. Protein Sci. 2012 Jun;21(6):769-85. doi: 10.1002/pro.2071. Epub 2012 Apr 23. Protein Sci. 2012. PMID: 22528593 Free PMC article. Review.
Finding Direction in the Search for Selection.
Thiltgen G, Dos Reis M, Goldstein RA. Thiltgen G, et al. Among authors: goldstein ra. J Mol Evol. 2017 Jan;84(1):39-50. doi: 10.1007/s00239-016-9765-5. Epub 2016 Dec 2. J Mol Evol. 2017. PMID: 27913840 Free PMC article.
Positive selection in dNTPase SAMHD1 throughout mammalian evolution.
Monit C, Morris ER, Ruis C, Szafran B, Thiltgen G, Tsai MC, Mitchison NA, Bishop KN, Stoye JP, Taylor IA, Fassati A, Goldstein RA. Monit C, et al. Among authors: goldstein ra. Proc Natl Acad Sci U S A. 2019 Sep 10;116(37):18647-18654. doi: 10.1073/pnas.1908755116. Epub 2019 Aug 26. Proc Natl Acad Sci U S A. 2019. PMID: 31451672 Free PMC article.
221 results